View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0268_high_5 (Length: 251)
Name: NF0268_high_5
Description: NF0268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0268_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 36271150 - 36270912
Alignment:
| Q |
2 |
gtttgatttcacactatgtataatatatctagatgcaaacctgcataatgtgcaggtgagtgtgtgatttgtactttggcattcaatagttttgatgcca |
101 |
Q |
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| T |
36271150 |
gtttgatttcacactatgtataatatatctagatgcaaacctgcataatgtgcaggtgtgtgtgtgatttgtactttggcgttcaatagttttgatgcca |
36271051 |
T |
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| Q |
102 |
agaaaaagaataatgaattggtttcacaaatttctttgtacatgaaaaaatgaaaacaagatctaagttgcttctctaaattagaaaggttattcatgca |
201 |
Q |
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| T |
36271050 |
agaaagagaataatgaattggtttcacaaatttctttgtacatgaaaaaatgaaaacaagatctaagttgcttctctaaattagaaaggttattcatgca |
36270951 |
T |
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| Q |
202 |
gtttgaacatttaaagtacgtgtattgcatgccctctgt |
240 |
Q |
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| T |
36270950 |
gtttgaacatttaaagtacgtgtcttgcatgccctctgt |
36270912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 42960418 - 42960556
Alignment:
| Q |
73 |
tactttggcattcaatagttttgatgccaagaaaaagaataatgaattggtttcacaaatttctttgtacatgaaaaaatgaaaacaagatctaagttgc |
172 |
Q |
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|||||||| ||||||||||||| |||| |||||| |||||| | || |||||| ||||||||| |||||||| |||||| ||| || || |||| | |
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| T |
42960418 |
tactttggtattcaatagtttttatgctaagaaagagaatagttaactggtttatcaaatttctctgtacatg-gaaaatg-aaataaaatgtaagatat |
42960515 |
T |
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| Q |
173 |
ttctctaaattagaaaggttattcatgcagtttgaacattt |
213 |
Q |
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|||||||| | |||||| |||||||||||||||||||||| |
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| T |
42960516 |
ttctctaatcttgaaaggctattcatgcagtttgaacattt |
42960556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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