View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0268_low_2 (Length: 391)
Name: NF0268_low_2
Description: NF0268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0268_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 41298815 - 41299013
Alignment:
| Q |
30 |
tttgggacatccatcttttggctatttgagacacttgtttccggatttatttttacatttgcagaatattgaatttaaatgtgatacttgtatttttggc |
129 |
Q |
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| T |
41298815 |
tttgggacatccatctttcggctatttgagacacttgtttccgaatttatttttacatttgcagaatgttgaatttaaatgtgatacttgtatttt-ggc |
41298913 |
T |
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| Q |
130 |
taaaagccatagaacctcctatcaaacaagtttaaataaaagcagtgttcctttttctctaatacattctgatgtgtggggaccatcccctgatactact |
229 |
Q |
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| T |
41298914 |
taaaagccatagaacctcctatcaaacaagtttaaataaaagcagtgttcctttttctctaatacattctgatgtgtggggaccatcccctaatactact |
41299013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 224 - 385
Target Start/End: Original strand, 41302302 - 41302463
Alignment:
| Q |
224 |
actactgtatccggttatcgttggtttgtaatatttatcgatgattacactcgaatgacatggctttacctaatgaaaactaaagacgaagtgtttcaaa |
323 |
Q |
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| T |
41302302 |
actactgtatccggttatcgttggtttgtaatatttatcgatgattgcactcgaatgacatggctttacccaatgaaaactaaagacgaagtgtttcaaa |
41302401 |
T |
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| Q |
324 |
tatttcagaattttcatgccatggttcaaaaccaattttctgccaagattcatattcttcga |
385 |
Q |
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| T |
41302402 |
tatttcagaattttcgtgccatggttcaaaaccaattttctgccaagattcatgttcttcga |
41302463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 10666033 - 10666129
Alignment:
| Q |
195 |
attctgatgtgtggggaccatcccctgatactactgtatccggttatcgttggtttgtaatatttatcgatgattacactcgaatgacatggcttta |
291 |
Q |
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| T |
10666033 |
attcttatgtgtggggtccttctccttttactgctttatcaggttattgttggtttgtgacttttattgataattgcactcgaatgacatggcttta |
10666129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 6845107 - 6845158
Alignment:
| Q |
241 |
tcgttggtttgtaatatttatcgatgattacactcgaatgacatggctttac |
292 |
Q |
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| T |
6845107 |
tcgttggtttgtgatatttattgatgattgcactcgaatgacttggatttac |
6845158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 21261964 - 21262015
Alignment:
| Q |
241 |
tcgttggtttgtaatatttatcgatgattacactcgaatgacatggctttac |
292 |
Q |
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| T |
21261964 |
tcgttggtttgtgatatttattgatgattgcactcgaatgacttggatttac |
21262015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 32223736 - 32223620
Alignment:
| Q |
175 |
tgttcctttttctctaatacattctgatgtgtggggaccatcccctgatactactgtatccggttatcgttggtttgtaatatttatcgatgattacact |
274 |
Q |
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|||||||||| || | || ||||||||||| ||||| |||||||| | || || |||| ||||| | |||||||| |||||| | ||||||| |||| |
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| T |
32223736 |
tgttccttttgctttgatccattctgatgtatggggtccatccccaaaatcttctatatctagttattggtggtttgtgatatttgttgatgattgcact |
32223637 |
T |
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| Q |
275 |
cgaatgacatggcttta |
291 |
Q |
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| T |
32223636 |
cgaatgacttggattta |
32223620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 47802536 - 47802587
Alignment:
| Q |
241 |
tcgttggtttgtaatatttatcgatgattacactcgaatgacatggctttac |
292 |
Q |
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| T |
47802536 |
tcgttggtttgtgatatttattgatgattgcactcgaatgacttggatttac |
47802587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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