View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0268_low_5 (Length: 327)
Name: NF0268_low_5
Description: NF0268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0268_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 36271633 - 36271344
Alignment:
| Q |
30 |
cttcttactggttatatatcagagacccagactctggatgccaagatgagtgattttgttgaaggggatattcccacttcatgcttaaaagtaacccttg |
129 |
Q |
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| T |
36271633 |
cttcttactggttatatatcagagacccagactctggatgccaagatgagtgattttgttgaaggggatattcccacttcatgcttaaaagtaacccttg |
36271534 |
T |
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| Q |
130 |
agcagcgagcagaatatctacccggtgctggtattcctcaaatatatgattcatctatatttgtcgaatcagaacttcctttaatcaagaggattttatg |
229 |
Q |
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| T |
36271533 |
agcagcgagcagaatatctacccggtgctggtattcctcaaatatacgattcatctatatttgtcgaatcagaacttcctttaatcaagaggattttatg |
36271434 |
T |
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| Q |
230 |
gtattggaagatgagtttatttatatggattgcaatgatggcattcgtgacagagctgctttttgttctagtgtgttgttggcctatgat |
319 |
Q |
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| T |
36271433 |
gtattggaagatgagtttatttatatggattgcaatgatggcatttgtgacggagctgctttttgttctagtgtgttgttggcctatgat |
36271344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 316
Target Start/End: Complemental strand, 5418010 - 5417748
Alignment:
| Q |
54 |
acccagactctggatgccaagatgagtgattttgttgaaggggatattcccacttcatgcttaaaagtaacccttgagcagcgagcagaatatctacccg |
153 |
Q |
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| T |
5418010 |
acccagattctgaatgtcaagatgagaggttttgttgaagggaatatacctacttcgtgcttgaaagtgacacttgagcaacgaccagaatatcaacctg |
5417911 |
T |
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| Q |
154 |
gtgctggtattcctcaaatatatgattcatctatatttgtcgaatcagaacttcctttaatcaagaggattttatggtattggaagatgagtttatttat |
253 |
Q |
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| T |
5417910 |
gtgctggcattcctgaaatatatgatgcatctcttgttgttgagtccgaacttccctttttcaaaaagatcatttggcattggaagcttagcatatttat |
5417811 |
T |
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| Q |
254 |
atggattgcaatgatggcattcgtgacagagctgctttttgttctagtgtgttgttggcctat |
316 |
Q |
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|||||| |||||||| ||||| |||||||| | ||||||||||||| | |||| ||||||| |
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| T |
5417810 |
atggatcacaatgatgacattcttgacagagttaatttttgttctagtattttgtaggcctat |
5417748 |
T |
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