View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_high_15 (Length: 229)
Name: NF0269_high_15
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 25924109 - 25923969
Alignment:
| Q |
1 |
tcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaacatgtcaaaccatg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25924109 |
tcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaacatgtaaaaccatg |
25924010 |
T |
|
| Q |
101 |
tcaatttctgtcacattgggaattacaaatactggaagcat |
141 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
25924009 |
tcaatttctgtcacattgggaattacaaatactggaagcat |
25923969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 25905266 - 25905126
Alignment:
| Q |
1 |
tcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaacatgtcaaaccatg |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
25905266 |
tcacatcaaccaatcaaccacttattcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagttaggcgaagaaacatgtaaaaccatg |
25905167 |
T |
|
| Q |
101 |
tcaatttctgtcacattgggaattacaaatactggaagcat |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905166 |
tcaatttctgtcacattgggaattacaaatactggaagcat |
25905126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 25883932 - 25883792
Alignment:
| Q |
1 |
tcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa-catgtcaaaccat |
99 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||||||| |
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| T |
25883932 |
tcacatcaaccaatcaaccactcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagttagg-gaagaaagcatgtaaaaccat |
25883834 |
T |
|
| Q |
100 |
gtcaatttctgtcacattgggaattacaaatactggaagcat |
141 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25883833 |
gtcaatttctgtaacattgggaattacaaatactggaagcat |
25883792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 25961160 - 25961300
Alignment:
| Q |
1 |
tcacatcaaccaatcaaccactcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa-catgtcaaaccat |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| |||||||| ||||||| ||||| ||||||| |
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|
| T |
25961160 |
tcacatcaaccaatcaaccacttattcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagttagg-gaagaaagcatgtaaaaccat |
25961258 |
T |
|
| Q |
100 |
gtcaatttctgtcacattgggaattacaaatactggaagcat |
141 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25961259 |
gtcaatttctgtaacattgggaattacaaatactggaagcat |
25961300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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