View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_high_16 (Length: 229)
Name: NF0269_high_16
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 25924085 - 25924231
Alignment:
| Q |
1 |
atgagtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccgaattcgtagacc |
100 |
Q |
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| T |
25924085 |
atgagtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccgaattcgtagacc |
25924184 |
T |
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| Q |
101 |
tttggacctgtgtagaaacggtaggttctaccgggatagcctgatga |
147 |
Q |
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| T |
25924185 |
tttggacctgtgtagaaacggtaggttctaccgggatagcctgatga |
25924231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 25961181 - 25961036
Alignment:
| Q |
4 |
agtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccgaattcgtagaccttt |
103 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961181 |
agtggttgattggttgatgtgaaggttgttatttttgacggaaatgaagttgtaggaataatttgagtagcttagaccatagccgaattcgtagaccttt |
25961082 |
T |
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| Q |
104 |
ggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
149 |
Q |
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| T |
25961081 |
ggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25961036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 25883908 - 25884056
Alignment:
| Q |
1 |
atgagtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccgaattcgtagacc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25883908 |
atgagtggttgattggttgatgtgaatgttgttgtttttgacggaaatgaagttgtaggaataatttgagtagcttaggccatagccgaattcgtagacc |
25884007 |
T |
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| Q |
101 |
tttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884008 |
tttggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25884056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 25905245 - 25905390
Alignment:
| Q |
4 |
agtggttgattggttgatgtgaaggttgttgtttttgacggaaataaagttgtaggaataatttgagtagcttagaccatagccgaattcgtagaccttt |
103 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25905245 |
agtggttgattggttgatgtgaaggttgttatttttgacggaaatgaagttgtaggaataatttgagtagcttaggccatagccgaattcgtagaccttt |
25905344 |
T |
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| Q |
104 |
ggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25905345 |
ggacctgtgtagaaacggtaggttctaccgggatagcctgatgatg |
25905390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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