View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0269_high_2 (Length: 585)

Name: NF0269_high_2
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0269_high_2
NF0269_high_2
[»] chr3 (2 HSPs)
chr3 (42-544)||(24564840-24565336)
chr3 (295-389)||(14164926-14165020)
[»] chr8 (6 HSPs)
chr8 (125-544)||(45532792-45533214)
chr8 (19-537)||(44338975-44339478)
chr8 (22-537)||(44335499-44335999)
chr8 (13-107)||(45532704-45532795)
chr8 (260-515)||(29633314-29633561)
chr8 (275-431)||(40389260-40389416)
[»] chr1 (1 HSPs)
chr1 (134-234)||(19190095-19190196)
[»] scaffold0295 (1 HSPs)
scaffold0295 (295-389)||(16257-16351)
[»] chr6 (1 HSPs)
chr6 (305-389)||(23096176-23096260)
[»] chr2 (1 HSPs)
chr2 (306-365)||(24867465-24867524)


Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 42 - 544
Target Start/End: Complemental strand, 24565336 - 24564840
Alignment:
Q  42 cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattatcgttatatattttctaatttatgat 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||    
T  24565336 cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat------atattttctaatttatgat 24565243  T
Q  142 ggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtata 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24565242 ggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtata 24565143  T
Q  242 tctttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagag 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24565142 tctttatacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagag 24565043  T
Q  342 aaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcag 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24565042 aaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaatcagtttttcgatagagaaatggagacatttcggtgtctgtggcag 24564943  T
Q  442 tgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttca 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24564942 tgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttca 24564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 14165020 - 14164926
Alignment:
Q  295 atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt 389  Q
    ||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| |||||||||||||||||| | | |||||||||||||||||||    
T  14165020 atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaataggaaaggagttgagcatcaaggccacattttt 14164926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 125 - 544
Target Start/End: Original strand, 45532792 - 45533214
Alignment:
Q  125 attttctaatttatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatttag 224  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  45532792 attttctaatttatgatggagatttctggttcccgtcaagtatgtttttcataatcgtttatattgtatgtttttgagagaattagtttttcatatttag 45532891  T
Q  225 tcatcttaatatgtat----atcttta---------------tacaaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttaccta 305  Q
    |||||||||| | |||    |||| ||               ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |    
T  45532892 tcatcttaatctatatctttatctatacattataagaaaaattacaaaggatgtgaacctttgatctgaatttttgtcattcaaatttcatccttaccaa 45532991  T
Q  306 gtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttc 405  Q
     |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||               ||||||    
T  45532992 atgatctttattacatttggttttgtagagatagagaaaagatcaagaaataggaaaggagtggggcatcaaggccaca---------------tttttc 45533076  T
Q  406 gatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtgg 505  Q
    ||| ||||||||| |||||||||||||| |||| ||||| ||||||||| |||||||||||| ||  |||||||||||||| ||||| |||||| ||||     
T  45533077 gatggagaaatggtgacatttcggtgtcggtggtagtgaagaagtcacaaagtagtcggtgcggt-aggggccaagtttctaactggaagatggcggtga 45533175  T
Q  506 acgtgctatgctaacgtatcgacgagaaaactttcatgt 544  Q
       |||||||||||||||| |||||||||||||| ||||    
T  45533176 ttatgctatgctaacgtatagacgagaaaactttgatgt 45533214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 44339478 - 44338975
Alignment:
Q  19 atcattgggttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattatcg 118  Q
    ||||||| ||||||||||||||| |||||||||||| || ||||   |||  ||||||||||||||| |||||| ||||||| |||||||||||||||      
T  44339478 atcattgagttataatatgaccaattataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat-- 44339384  T
Q  119 ttatatattttctaatttatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcat 218  Q
        ||||||||||||||| |||||| |||| | ||||||||| | | |||||||||          || ||||||||||||||||||||||||||||||    
T  44339383 ----atattttctaatttacgatggatatttatcgttcccttccaatgtgtttttca----------tagtttatgtttttgagagaattagtttttcat 44339298  T
Q  219 atttagtcatcttaatatgtat----atctttatac-------aaaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagt 307  Q
    ||| ||| || ||||| | |||    |||| || ||       |||||||| ||||||||||| |  |||||| |||||| ||||||||||||||| |||    
T  44339297 attaagtaattttaatctatatctttatctatacactataacaaaaggatgtggacctttgatttcgatttttatcattccaatttcatccttaccaagt 44339198  T
Q  308 gatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcga 407  Q
    ||||| | ||||| ||||| ||||||||| ||||||||||||||||||||||||||||   | | |||||||||||||||||||||| | | ||| | ||    
T  44339197 gatctgttttacacttggttttgtagagacagagaaaagatgaagaaataggaaaggaggggagaatcaaggccacatttttcatcagcaactttattga 44339098  T
Q  408 tagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggac 507  Q
    ||||||| | |||||||||||      |||||  ||| ||||||||| |||||||| |||||| ||||| ||||||| | ||  |||||||| |||||||    
T  44339097 tagagaagtcgagacatttcg------gtggctttgaagaagtcacaaagtagtcgatgcagt-gggggacaagtttttaaccaggagatggcggtggac 44339005  T
Q  508 gtgctatgctaacgtatcgacgagaaaact 537  Q
    ||||||||||||||||  || |||||||||    
T  44339004 gtgctatgctaacgtagagatgagaaaact 44338975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 22 - 537
Target Start/End: Original strand, 44335499 - 44335999
Alignment:
Q  22 attgggttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattatcgtta 121  Q
    |||| |||||||||| |||| |||||||||||| || ||||   |||  ||||||||||||||| |||||| ||||||| |||||||||||||||         
T  44335499 attgagttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat----- 44335590  T
Q  122 tatattttctaatttatgatggacatttctggttcccttcaagtatgtttttcagaattgtttataatttatgtttttgagagaattagtttttcatatt 221  Q
     ||||||||||||||| |||||| |||| | ||||||||| |||||||||||||          || ||||||||||||||||||||| |||||||||||    
T  44335591 -atattttctaatttacgatggatatttatcgttcccttcgagtatgtttttca----------tattttatgtttttgagagaattaatttttcatatt 44335679  T
Q  222 tagtcatcttaatatgtatatctttataca-------------aaggatgcggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtg 308  Q
     ||  || ||||| |  |||||||||| ||             ||||||| ||||||||||| |  |||||| |||||| ||||||||||||||| ||||    
T  44335680 aaggaattttaatct--atatctttatccatacactataacaaaaggatgtggacctttgattttgatttttatcattccaatttcatccttaccaagtg 44335777  T
Q  309 atctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacatttttcatcaaccagtttttcgat 408  Q
    |||| | ||||| ||||| |||||||||  |||||||||||||||||||||||||||   | |||||||||||||||||||||||| | | ||| | |||    
T  44335778 atctgttttacacttggttttgtagagacggagaaaagatgaagaaataggaaaggaggggagcatcaaggccacatttttcatcagcaactttattgat 44335877  T
Q  409 agagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtttcttactgggagatggtggtggacg 508  Q
    |||||| | |||||||||||||  ||       ||| ||||||||| |||||||||||| |  ||||| ||||||| | ||  ||||||| |||||||||    
T  44335878 agagaagtcgagacatttcggtaact------ttgaagaagtcacaaagtagtcggtgc-gatgggggacaagtttttaaccaggagatgatggtggacg 44335970  T
Q  509 tgctatgctaacgtatcgacgagaaaact 537  Q
    |||||||||||||||  || |||||||||    
T  44335971 tgctatgctaacgtagagatgagaaaact 44335999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 45532704 - 45532795
Alignment:
Q  13 atactgatcattgggttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagattt 107  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||   |||| |||  |||||||||||||| |||||||||| |||| |||||||    
T  45532704 atactcatcattgggttataatatgaccaattataattcaaaat---aaaaaatttgaagtttttattcttaaagatattacattttaaagattt 45532795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 515
Target Start/End: Original strand, 29633314 - 29633561
Alignment:
Q  260 ggacctttgatgtgaatttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaatagg 359  Q
    |||||||| || || |||||| |||||| ||||  || |||| | ||||||| |||||||| ||||| ||| ||||  | |||||| || ||||||||||    
T  29633314 ggacctttaatctggatttttatcattccaattctattcttagcaagtgatcgttattacacttggtcttgaagaggcaaagaaaatataaagaaatagg 29633413  T
Q  360 aaaggactagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagta 459  Q
    ||| || ||||| ||||| ||||  ||||||| |  |||||||| |||||| ||||||| || |||| |      |||||||||| ||| ||||| || |    
T  29633414 aaacgagtagggtatcaatgccatgtttttcaactgccagttttgcgatagggaaatggggatattttg------gtggcagtgaagaaatcacaaagca 29633507  T
Q  460 gtcggtgcagtggggggccaagtttcttactgggagatggtggtggacgtgctatg 515  Q
    |||||||||   |||||| |||||| | ||| |||||||| ||||| | |||||||    
T  29633508 gtcggtgca--tgggggctaagtttttaactaggagatggcggtggtcctgctatg 29633561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 431
Target Start/End: Original strand, 40389260 - 40389416
Alignment:
Q  275 atttttgtcattcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcat 374  Q
    |||||| |||||| ||||  || |||| | ||||||| |||||||| ||| | ||| ||||  | |||||| || ||||||||||||| || ||||| ||    
T  40389260 atttttatcattccaattctattcttagcaagtgatcgttattacacttgatcttgaagaggcaaagaaaatataaagaaataggaaacgagtagggtat 40389359  T
Q  375 caaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtg 431  Q
    ||| ||||  ||||||| |  |||||||| |||||  ||||||| ||||||| ||||    
T  40389360 caatgccatgtttttcaactgccagttttgcgatatggaaatggggacattttggtg 40389416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 19190095 - 19190196
Alignment:
Q  134 tttatgatggacatttctggttcccttcaagtatgtttttc-agaattgtttataatttatgtttttgagagaattagtttttcatatttagtcatctta 232  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19190095 tttatgattgacatttctggttcccttcaagtatgtttttttagaattgtttatattttatgtttttgagagaattagtttttcatatttagtcatctta 19190194  T
Q  233 at 234  Q
    ||    
T  19190195 at 19190196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 16257 - 16351
Alignment:
Q  295 atccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt 389  Q
    ||||||| | ||||||| |||||||| ||||| ||| ||||| ||||||||| ||||||||||| |||||| | | |||||||||||||||||||    
T  16257 atccttagcaagtgatcattattacacttggttttgaagagacagagaaaaggtgaagaaatagaaaaggagttgagcatcaaggccacattttt 16351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 23096260 - 23096176
Alignment:
Q  305 agtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccacattttt 389  Q
    ||||||| |||||||| ||||| ||| |||||| |||||||| |||||||||||||||||  | |||||||||||| ||||||||    
T  23096260 agtgatcattattacacttggttttgaagagatggagaaaaggtgaagaaataggaaaggggtggggcatcaaggctacattttt 23096176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 24867524 - 24867465
Alignment:
Q  306 gtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaagga 365  Q
    ||||| ||||||| | ||||| ||||||||| || ||||||| |||||||||||||||||    
T  24867524 gtgatttttattagacttggttttgtagagacagtgaaaagaagaagaaataggaaagga 24867465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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