View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_high_4 (Length: 410)
Name: NF0269_high_4
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 28612794 - 28613019
Alignment:
| Q |
31 |
ttgacatttctttacattaaaattcaaaaccaaatcgtacttttgatatcaatgttaatgtcctctgtcacatttgcttgtaacatacaatgttacttgt |
130 |
Q |
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| T |
28612794 |
ttgacatttctttacattaaaattcaaaaccaaatcgtacttttgatatcaatgttaatgtcctctgtcacatttgcttgtaacatacaatgttacttgt |
28612893 |
T |
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| Q |
131 |
tcctttacaacactttgacattctcttgggtttgttcaatatatgattttgtaggaaaaaagggaaatgaacattaattaaaaggnnnnnnnttcaaagc |
230 |
Q |
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| T |
28612894 |
tcctttacaacactttgacattctcttgggtttgtccaatatatgattttgtaggaaaaaagggaaatgaacattaattaaaaggaaaaaaattcaaagc |
28612993 |
T |
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| Q |
231 |
ctgtggcctaggattctcagcttcca |
256 |
Q |
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| T |
28612994 |
ctgtggcctaggattctcagcttcca |
28613019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 28613087 - 28613166
Alignment:
| Q |
322 |
ctttgtgaaatattcttgagctactataataattatggatcataactgcatatatattttctcaccaatatgagtataat |
401 |
Q |
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| T |
28613087 |
ctttgtgaaatattcttgagctactataataattatggatcataactgcatatatattttctcaccaatatgagtgtaat |
28613166 |
T |
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