View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0269_high_5 (Length: 347)

Name: NF0269_high_5
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0269_high_5
NF0269_high_5
[»] chr3 (2 HSPs)
chr3 (95-341)||(25601802-25602048)
chr3 (147-341)||(25597049-25597252)
[»] chr4 (6 HSPs)
chr4 (147-287)||(36636745-36636885)
chr4 (147-287)||(36643440-36643580)
chr4 (174-277)||(36613165-36613268)
chr4 (147-232)||(36668463-36668548)
chr4 (147-255)||(35968458-35968566)
chr4 (220-287)||(36909764-36909831)
[»] chr5 (2 HSPs)
chr5 (148-277)||(19658151-19658280)
chr5 (148-277)||(19674990-19675119)
[»] chr1 (1 HSPs)
chr1 (147-239)||(42602730-42602822)
[»] chr6 (2 HSPs)
chr6 (147-185)||(33840185-33840223)
chr6 (147-209)||(33844153-33844215)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 95 - 341
Target Start/End: Original strand, 25601802 - 25602048
Alignment:
Q  95 tatattgcattcctctgaatttcccactataaagagttttgcggcattcatctctaagattttgactcttcgtgatagctcagcttcattgaatgctctt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601802 tatattgcattcctctgaatttcccactataaagagttttgcggcattcgtctctaagattttgactcttcgtgatagctcagcttcattgaatgctctt 25601901  T
Q  195 gatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatg 294  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601902 gatcttgactgtgatggtaacatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatg 25602001  T
Q  295 ttaggggtgataatgatctcattctccaatgtgtttcttcatctcac 341  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  25602002 ttaggggtgatagtgatctcattctccaatgtgtttcttcatgtcac 25602048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 341
Target Start/End: Original strand, 25597049 - 25597252
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgt---------gatggtaatatccagcctcgactcctcaaaa 237  Q
    ||||||||||| ||||||||||||||| || ||||| || ||||||||||||||||| ||         ||||||||||||| | ||  |||||||||||    
T  25597049 tctaagattttaactcttcgtgatagcacaacttcactgcatgctcttgatcttgaccgtacaccctatgatggtaatatcccgtctgaactcctcaaaa 25597148  T
Q  238 agattttaaagtatgtttcctctcataattcccaactccacgaattaggagtctatgttaggggtgataatgatctcattctccaatgtgtttcttcatc 337  Q
    |||| ||| | |||||||| |||||||||||||| || |  ||||||||| ||| |||||||||||||| || ||||||||| || |||||||||||||     
T  25597149 agatattagactatgtttcttctcataattcccaccttcgggaattaggaatctctgttaggggtgatagtggtctcattcttcattgtgtttcttcatg 25597248  T
Q  338 tcac 341  Q
    ||||    
T  25597249 tcac 25597252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 36636885 - 36636745
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 246  Q
    ||||| || |||||||||||||||| |||| || || || | ||||||||||||||| || ||||||| ||  |||||| |||||| |||||||||||||    
T  36636885 tctaacatattgactcttcgtgatacctcaactgcactgcacgctcttgatcttgaccgtcatggtaacattgagcctcaactccttaaaaagattttaa 36636786  T
Q  247 agtatgtttcctctcataattcccaactccacgaattagga 287  Q
    | ||||||||||| |||||| |||| ||||| || ||||||    
T  36636785 actatgtttcctcccataatacccacctccaggatttagga 36636745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 36643580 - 36643440
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 246  Q
    ||||| ||||||||||||||  |||||||| ||||  || | |||||  |||||||  ||  |||| ||||  | |||| |||||| |||||||||||||    
T  36643580 tctaacattttgactcttcgcaatagctcaacttctctgcaagctctcaatcttgatcgtcgtggtgatattgaacctcaactccttaaaaagattttaa 36643481  T
Q  247 agtatgtttcctctcataattcccaactccacgaattagga 287  Q
    | ||| ||| ||| |||||| |||| |||||||||||||||    
T  36643480 attatatttgctcccataatacccacctccacgaattagga 36643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 277
Target Start/End: Complemental strand, 36613268 - 36613165
Alignment:
Q  174 tcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaac 273  Q
    |||||| ||||| |||| |||||| ||||||||   ||||||||  |||||||| |||| ||||||||||| || |||||||||||  ||||| |||| |    
T  36613268 tcagctgcattggatgcccttgattttgactgtagaggtaatattgagcctcgaatccttaaaaagattttgaattatgtttcctcagataatacccacc 36613169  T
Q  274 tcca 277  Q
    ||||    
T  36613168 tcca 36613165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 36668548 - 36668463
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcct 232  Q
    |||||||||||||||||||||||||||||| || |||||   | ||||||| ||||| || |||||||| |  | |||||||||||    
T  36668548 tctaagattttgactcttcgtgatagctcaactgcattgcgcgttcttgatgttgaccgtaatggtaattttgaacctcgactcct 36668463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 35968458 - 35968566
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaa 246  Q
    ||||||||||||||||||||||||| ||||  | || || | ||||||||| ||||| || ||||||||||  || ||| ||||||  ||||| |||||     
T  35968458 tctaagattttgactcttcgtgatacctcaattccactgcaagctcttgatattgaccgtcatggtaatattgagtctcaactccttgaaaaggttttag 35968557  T
Q  247 agtatgttt 255  Q
    | |||||||    
T  35968558 actatgttt 35968566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 36909764 - 36909831
Alignment:
Q  220 agcctcgactcctcaaaaagattttaaagtatgtttcctctcataattcccaactccacgaattagga 287  Q
    |||||| |||||| |||||||||||||| |||||| | || |||||| |||| ||||| |||||||||    
T  36909764 agcctcaactccttaaaaagattttaaactatgttacttcccataatacccacctccatgaattagga 36909831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 19658280 - 19658151
Alignment:
Q  148 ctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaa 247  Q
    |||||||||||||||||||||||| ||||  ||||||| | || |||||||||||| || ||||| ||||  |||||||| |||| |||||||||||| |    
T  19658280 ctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttaga 19658181  T
Q  248 gtatgtttcctctcataattcccaactcca 277  Q
     ||||||| ||| |||||| |||| |||||    
T  19658180 ttatgtttgctcacataatacccacctcca 19658151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 19675119 - 19674990
Alignment:
Q  148 ctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaagattttaaa 247  Q
    |||||||||||||||||||||||| ||||  ||||||| | || |||||||||||| || ||||| ||||  |||||||| |||| |||||||||||| |    
T  19675119 ctaagattttgactcttcgtgatacctcaatttcattgcacgcccttgatcttgaccgtcatggtcatattgagcctcgaatccttaaaaagattttaga 19675020  T
Q  248 gtatgtttcctctcataattcccaactcca 277  Q
     ||||||| ||| |||||| |||| |||||    
T  19675019 ttatgtttgctcacataatacccacctcca 19674990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 42602822 - 42602730
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgatggtaatatccagcctcgactcctcaaaaag 239  Q
    ||||||||||||||||||||||||| |||| || || || |||||||||||||| || || |||||| |||  |||| | |||||| ||||||    
T  42602822 tctaagattttgactcttcgtgatacctcaactgcactgcatgctcttgatcttcaccgtcatggtagtattgagccgcaactccttaaaaag 42602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 33840223 - 33840185
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattg 185  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  33840223 tctaagattttgactcttcgtgataactcagctgcattg 33840185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 33844215 - 33844153
Alignment:
Q  147 tctaagattttgactcttcgtgatagctcagcttcattgaatgctcttgatcttgactgtgat 209  Q
    ||||||||||||||||||||||||| ||||||| || || ||  ||||||| |||| ||||||    
T  33844215 tctaagattttgactcttcgtgataactcagctgcactgcatattcttgattttgagtgtgat 33844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 892 times since January 2019
Visitors: 2569