View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_low_1 (Length: 654)
Name: NF0269_low_1
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_low_1 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 30 - 639
Target Start/End: Complemental strand, 26243 - 25634
Alignment:
| Q |
30 |
cctccaaagaagagtgaccttaaaggccatcgatcttctgctcataaaaggtccttttcaaaggtgtccgagaagttgagtttttcatctaacaataaaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26243 |
cctccaaagaagagtgaccttaaaggccatcgatcttctgctcataaaaggtccttttcaaaggtgtccgagaagttgagtttttcatctaacaataaaa |
26144 |
T |
|
| Q |
130 |
ctaacactctcctctctatttattgaacatggtagaaaatcattgcatgatactgatagtggtagttattaaccatatagattggttaatcctctgaaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26143 |
ctaacactctcctctctatttattgaacatggtagaaaatcattgcatgatactgatagtggtagttattaaccatatagattggttaatcctctgaaat |
26044 |
T |
|
| Q |
230 |
ccttgcatacaaatccagttagtatttagaagattaatagggctccattgaaagcagctagtaatgtggctttatcgattactagtgaagcgagaagttc |
329 |
Q |
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| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26043 |
ctttgcatacaaatctagttagtatttagaagattaatagggctccattgaaagcagctagtaatgtggctttatcgattactagtgaagcgagaatttc |
25944 |
T |
|
| Q |
330 |
ataggttatatatataaatgtacattgttatatacatggaaaacaatcttatagtggcagtacaacttatttaggatgtcttctttactgtaaagggaaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25943 |
ataggttatatatataaatgtacattgttatatacatggaaaacaatcttatagtggcagtacaacttatttaggatgtcttctttactgtaaagggaaa |
25844 |
T |
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| Q |
430 |
tacttttcaattttcatttnnnnnnnntgtgcaggacaattccttattcatcgtgtagatgcacattttccagaacttggtttgtagaaaatgactatct |
529 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25843 |
ttcttttcaattttcatttaaaaaaaatgtgcaggacaattccttattcatcgtgtagttgcacattttccagaacttggtttgtagaaaatgactatct |
25744 |
T |
|
| Q |
530 |
agttgttagtttattcttaagtatttaataatttgaatatcatatctattcatttcaagtggtttaatttggttatttttcatgttcatttatcatttgt |
629 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25743 |
agttgttagtttattcttaagtatttaataatttgaatatcatatctattcatttcaagtggtttaatttggttatttttcatgttcatttatcatttgt |
25644 |
T |
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| Q |
630 |
tcatttgttc |
639 |
Q |
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|||||||||| |
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| T |
25643 |
tcatttgttc |
25634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 30 - 639
Target Start/End: Original strand, 10436165 - 10436774
Alignment:
| Q |
30 |
cctccaaagaagagtgaccttaaaggccatcgatcttctgctcataaaaggtccttttcaaaggtgtccgagaagttgagtttttcatctaacaataaaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
10436165 |
cctccaaagaagagtgaccttaaaggccatcgatcttctgctcataaaatgtccttttcaaaggtgtcagagaagttgagtttttcatccaacaataaaa |
10436264 |
T |
|
| Q |
130 |
ctaacactctcctctctatttattgaacatggtagaaaatcattgcatgatactgatagtggtagttattaaccatatagattggttaatcctctgaaat |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10436265 |
ctaacactctcctctctatttattgaacatggtagaaaatcattgcatgatactgatagtggtagttattaaccatatagattggttaatcctctgaaat |
10436364 |
T |
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| Q |
230 |
ccttgcatacaaatccagttagtatttagaagattaatagggctccattgaaagcagctagtaatgtggctttatcgattactagtgaagcgagaagttc |
329 |
Q |
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| T |
10436365 |
ctttgcatacaaatctagttagtatttagaagattaatagggctccattgaaagcagctagtaatgtggctttatcgattactagtgaagcgagaatttc |
10436464 |
T |
|
| Q |
330 |
ataggttatatatataaatgtacattgttatatacatggaaaacaatcttatagtggcagtacaacttatttaggatgtcttctttactgtaaagggaaa |
429 |
Q |
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| T |
10436465 |
ataggttatatatataaatgtacattgttatatacatggaaaacaatcttatagtggcagtacaacttatttaggatgtcttctttactgtaaagggaaa |
10436564 |
T |
|
| Q |
430 |
tacttttcaattttcatttnnnnnnnntgtgcaggacaattccttattcatcgtgtagatgcacattttccagaacttggtttgtagaaaatgactatct |
529 |
Q |
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| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10436565 |
tgcttttcaattttcatttaaaaaaaaagtgcaggacaattccttattcatcgtgtaggtgcacattttccagaacttggtttgtagaaaatgactatct |
10436664 |
T |
|
| Q |
530 |
agttgttagtttattcttaagtatttaataatttgaatatcatatctattcatttcaagtggtttaatttggttatttttcatgttcatttatcatttgt |
629 |
Q |
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| T |
10436665 |
agttgttagtttattcgtaagtatttaataatttgaatatcatatctattcatttcaagtggtttaatttggttatttttcatgttcatttatcatttgt |
10436764 |
T |
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| Q |
630 |
tcatttgttc |
639 |
Q |
| |
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|||||||||| |
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| T |
10436765 |
tcatttgttc |
10436774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 27186193 - 27186271
Alignment:
| Q |
262 |
attaatagggctccattgaaagcagctagtaatgtggctttatcgattactagtgaagcgagaagttcataggttatat |
340 |
Q |
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||||||||| ||||||||||| || ||||||||| |||| | || ||||||| ||| |||||||||||||||||||| |
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| T |
27186193 |
attaataggactccattgaaaccatctagtaatgctactttgttgaatactagtaaagagagaagttcataggttatat |
27186271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 13283133 - 13283198
Alignment:
| Q |
237 |
tacaaatccagttagtatttagaagattaatagggctccattgaaagcagctagtaatgtggcttt |
302 |
Q |
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|||||||||||||||||||||||| | |||||| || ||| ||||||| ||||||||||||||| |
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| T |
13283133 |
tacaaatccagttagtatttagaaaactaatagacttcaatttaaagcagttagtaatgtggcttt |
13283198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 28729042 - 28729006
Alignment:
| Q |
234 |
gcatacaaatccagttagtatttagaagattaatagg |
270 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||| |
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| T |
28729042 |
gcatacaaacccagttggtatttagaagattaatagg |
28729006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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