View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0269_low_13 (Length: 321)
Name: NF0269_low_13
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 94 - 318
Target Start/End: Complemental strand, 16790236 - 16790011
Alignment:
| Q |
94 |
atttctcctacaaaggaagttacgtacaattatcccttttgaaacgtatcaaattactatacgtattagttaaaagactgcattaatttttctattagnn |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16790236 |
atttctcctacaaaggaagttacgtacaattatcccttttgaaacgtatcaaattactatacgtattagttaaaagactgcattaatttttatattactt |
16790137 |
T |
|
| Q |
194 |
nnnnnaaaacttattcaataaatcgtttgacc-nnnnnnnncttctcatatgctacctttgttggaattgatcatattttacttcaatatctatggcctt |
292 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16790136 |
tttttaaaacttattcaataaatcatttgaccttttttcttcttctcatatgctacctttattggaattgatcatattttacttcaacatctatggcctt |
16790037 |
T |
|
| Q |
293 |
caacaacgaaattcaacctacggtat |
318 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
16790036 |
caacaacgaaattcaacctatggtat |
16790011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1240 times since January 2019
Visitors: 2574