View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_low_15 (Length: 319)
Name: NF0269_low_15
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8315240 - 8315012
Alignment:
| Q |
1 |
tcatgttaactccattttctccctttggttgttcttattctatcacttccttgacttcatgagattcttgttgtttgattgtttcaactgcatgacattc |
100 |
Q |
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| T |
8315240 |
tcatgttaactccattttctcactttggttgttcttattctatcacttccttgacttcatgagattcttgttgtttgattgtttcaactgcatgacattc |
8315141 |
T |
|
| Q |
101 |
aatacctgcatcttgcttcatgttttccggtgagatatgatgtatcaactatcaagtattcactttttgacctaagcacaatctctttatactctaaatt |
200 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
8315140 |
aatacctgcatcttgcctcatgttttccggtgagatatgacatatcagctatcaagtattcaccttttgacctaagcacaatctctttatactctaagtt |
8315041 |
T |
|
| Q |
201 |
aattctagcttttgaagtagctagaaaag |
229 |
Q |
| |
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|||||||||| |||||||||||||||||| |
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| T |
8315040 |
aattctagctattgaagtagctagaaaag |
8315012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 16857400 - 16857539
Alignment:
| Q |
81 |
gtttcaactgcatgacattcaatacctgcatcttgcttcatgttttccggtgagatatgatgtatcaactatcaagtattcactttttgacctaagcaca |
180 |
Q |
| |
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||||||||| ||| |||||||||| |||||||||| |||||||||| || |||||||||||||||| |||||||| ||| ||||||||| || |
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| T |
16857400 |
gtttcaactacattgcattcaatacatgcatcttgcctcatgttttcttgtaagatatgatgtatcaa-------gtattcaccttt-gacctaagccca |
16857491 |
T |
|
| Q |
181 |
atctctttatactctaaattaattctagcttttgaagtagctagaaaa |
228 |
Q |
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|||||||||||||| || || |||| || ||||||||||||||||||| |
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| T |
16857492 |
atctctttatactccaagttgattcaagattttgaagtagctagaaaa |
16857539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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