View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0269_low_19 (Length: 279)

Name: NF0269_low_19
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0269_low_19
NF0269_low_19
[»] chr4 (1 HSPs)
chr4 (62-225)||(22325131-22325294)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 22325131 - 22325294
Alignment:
Q  62 aaatatttgacatggtatagttgtcatatctgagatgataatactatcagcagaatcctccttgaacatttggttaaaaacacttgactttgaaccaaga 161  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22325131 aaatatttgacatggtatagttgtcatatctgagatggtaatactatcaacagaatcctccttgaacatttggttaaaagcacttgactttgaaccaaga 22325230  T
Q  162 gcaaacttatgggccataatagtttgtttagatgcatcaatatagattgttgtgtcttcatctc 225  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  22325231 gcatacttatgggccataatagtttgtttagatgcatcaatatagatttttgtgtctttatctc 22325294  T

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