View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0269_low_26 (Length: 226)

Name: NF0269_low_26

Description: NF0269

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0269_low_26

[»] chr4 (1 HSPs)

Alignment Details

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 136; E-Value: 4e-71

Query Start/End: Original strand, 45 - 208

Target Start/End: Original strand, 22325131 - 22325294

Alignment:

Q	45	aaatatttgacatggtatagttgtcatatctgagatgataatactatcagcagaatcctccttgaacatttggttaaaaacacttgtctttgaaccaaga	144	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	22325131	aaatatttgacatggtatagttgtcatatctgagatggtaatactatcaacagaatcctccttgaacatttggttaaaagcacttgactttgaaccaaga	22325230	T

Q	145	gcaaacttatgggccataatagtttgtttagatgcatcaatatagattgttgtgtcttcatctc	208	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	22325231	gcatacttatgggccataatagtttgtttagatgcatcaatatagatttttgtgtctttatctc	22325294	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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