View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_low_28 (Length: 207)
Name: NF0269_low_28
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 51684772 - 51684906
Alignment:
| Q |
1 |
gcaatcatctgcaccaaatcatcttttcattttcacacaagggccgtcagaaccatatcaaaaattactgttgcaacccattgattgcaatcatgttaac |
100 |
Q |
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| T |
51684772 |
gcaatcatctgcaccaaatcatcttttcattttcacccaaggtccgtcagaaccatatcaaaaattattgttgcaacccattgattgcaatcatgttaac |
51684871 |
T |
|
| Q |
101 |
tattgatcacaatcacaccttttttcttctctctc |
135 |
Q |
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| T |
51684872 |
tattgatcacaatcacaccctttttcttctatctc |
51684906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 103
Target Start/End: Complemental strand, 39689972 - 39689878
Alignment:
| Q |
10 |
tgcaccaaatcatcttttcattttcacacaagggccgt-cagaaccatatcaaaaattactgttgcaacccattgattgcaatcatgttaactat |
103 |
Q |
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||||||||||||||||||||||||||||||||| |||| || || ||| | |||||| ||||| ||||||||||||| ||||| ||||||||| |
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| T |
39689972 |
tgcaccaaatcatcttttcattttcacacaaggtccgtccacaatcatctatgaaattattgttgtaacccattgattgaaatcacgttaactat |
39689878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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