View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_low_3 (Length: 455)
Name: NF0269_low_3
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 29 - 450
Target Start/End: Original strand, 33818929 - 33819351
Alignment:
| Q |
29 |
agcttgttcaacaatcttcattagcatcacatcttatgtgacaggaaatattttattataagatgtatt--attctttctccattaatgctactcattct |
126 |
Q |
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| T |
33818929 |
agcttgttcaacaatcttcattagcatcacatcttatgtgacaggaaatattttattataagatgtattttattctttctccattaatgttactcattct |
33819028 |
T |
|
| Q |
127 |
tttatgagtttcataactttaggcctatgta--tatatagaagtctaatcatatttcatttttgttatcagaaccactgttaatagagtggggaaaatcg |
224 |
Q |
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| T |
33819029 |
tttatgagtttcataactttaggcctatgtaaatatatagaagtctaatcatatttcatttttgttatcagaaccactattaatagagtggggaaaatcg |
33819128 |
T |
|
| Q |
225 |
atcctctaaattgtaaatatttgtcgaaatagtctcttatttttgcaaattaagatacacattttttgaaattgtaagatatcattcaaaaatattataa |
324 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33819129 |
atcctctaaattgtaaatatttgtcgaaatagtatcttattattgcaaattaagatacacattttttgaaattgtaagatatcattcaaa---attataa |
33819225 |
T |
|
| Q |
325 |
aagatatatttgaaaacgtaaaatattaatcaaaagttgtcctcgttagaatttagaagttatgatatgacatattaactgaacacgtcacgttgcatgc |
424 |
Q |
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|||| |||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33819226 |
aagacatatttgaaaacgtaaaacattgatcaaaagttatcctcgttagaacttagaagttatgatatgacatattaactgaacacgtctcgttgcatgc |
33819325 |
T |
|
| Q |
425 |
taatctcgcatccatttcatctcact |
450 |
Q |
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||||||||||||||||||| |||||| |
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| T |
33819326 |
taatctcgcatccatttcaactcact |
33819351 |
T |
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