View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0269_low_32 (Length: 202)

Name: NF0269_low_32
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0269_low_32
NF0269_low_32
[»] chr1 (1 HSPs)
chr1 (1-110)||(9469963-9470072)
[»] chr3 (2 HSPs)
chr3 (68-110)||(31001861-31001903)
chr3 (68-109)||(31003487-31003528)
[»] chr4 (1 HSPs)
chr4 (68-108)||(2530793-2530833)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9469963 - 9470072
Alignment:
Q  1 tttatatgaaagtaagatctaataagattcattttattaaaaacatgttgctatttggaatattgacgcaatgccaacgtctgattgaactagttattca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9469963 tttatatgaaagtatgatctaataagattcattttattaaaaacatgttgctatttggaatattgacgcaatgccaacgtctgattgaactagttattca 9470062  T
Q  101 aggttatatc 110  Q
    ||||||||||    
T  9470063 aggttatatc 9470072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 31001903 - 31001861
Alignment:
Q  68 gcaatgccaacgtctgattgaactagttattcaaggttatatc 110  Q
    |||||||||| ||| ||||||||||||||||||||||||||||    
T  31001903 gcaatgccaaagtccgattgaactagttattcaaggttatatc 31001861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 31003528 - 31003487
Alignment:
Q  68 gcaatgccaacgtctgattgaactagttattcaaggttatat 109  Q
    |||||||||| |||||||||||||||||||||||| ||||||    
T  31003528 gcaatgccaaagtctgattgaactagttattcaagattatat 31003487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 2530793 - 2530833
Alignment:
Q  68 gcaatgccaacgtctgattgaactagttattcaaggttata 108  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  2530793 gcaatgtcaaagtctgattgaactagttattcaaggttata 2530833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 8540 times since January 2019
Visitors: 8132