View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0269_low_5 (Length: 418)
Name: NF0269_low_5
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0269_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 189 - 389
Target Start/End: Complemental strand, 186405 - 186206
Alignment:
| Q |
189 |
ttagcattgaaagttgtcgatcgaaaagattgaaaaaacaacaacaataataatatagcatgtgctagacgatttgagaacattccttatctttttgcct |
288 |
Q |
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| T |
186405 |
ttagcattgaaagttgtcgatcgaaaagattgaaaaaacaacaacaataataatatagcatgtgctagacgatttgagaacattccttatctttttgcct |
186306 |
T |
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| Q |
289 |
gacttgttacctttcatttgttggctgtctacgtcaggcctcatagtgcaaaataattttaatatgctccaattgtatgagttggatccaaataaagttt |
388 |
Q |
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| T |
186305 |
gacttgttacctttcatttgttggctgtctacgtcaggcctcatagtgcaaaataattttaatatgctcc-attgtatgagttggatccaaataaagttt |
186207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 186703 - 186520
Alignment:
| Q |
8 |
gagcagagatcaaactacgagtgaaaaactcaagtccttatgttttcaaatgtggtcatattttgtaccacttgtaagaataatttgtggctactgtttg |
107 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
186703 |
gagcagaaatcaaactacgagtgaaaaactcaagtccttatgttttcaaatgtggtcatattttgtaccacttataagaataatttgtggctactgtttg |
186604 |
T |
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| Q |
108 |
actaacaataattttatatatgtctaacacaaaatctgcctccagcatcctcatagaccctaaagctaccagtatttttcgtta |
191 |
Q |
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| T |
186603 |
actaacaataattttatatatgtctaacacaaaatctgcctccagcgtcctcatagaccctaaagctaccagtatttttcgtta |
186520 |
T |
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