View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0269_low_7 (Length: 358)

Name: NF0269_low_7
Description: NF0269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0269_low_7
NF0269_low_7
[»] chr4 (9 HSPs)
chr4 (28-358)||(9568276-9568609)
chr4 (28-357)||(9582638-9582967)
chr4 (28-357)||(9588333-9588662)
chr4 (32-358)||(9594430-9594759)
chr4 (28-358)||(9573422-9573742)
chr4 (41-358)||(9603233-9603553)
chr4 (265-335)||(54295770-54295840)
chr4 (51-144)||(54295949-54296042)
chr4 (57-137)||(37894937-37895017)
[»] chr6 (20 HSPs)
chr6 (51-229)||(34279321-34279499)
chr6 (51-175)||(29123221-29123345)
chr6 (38-174)||(32745720-32745856)
chr6 (53-204)||(29152911-29153062)
chr6 (34-231)||(32973437-32973634)
chr6 (59-175)||(29144369-29144485)
chr6 (54-174)||(29149729-29149849)
chr6 (74-174)||(23216833-23216933)
chr6 (34-137)||(34281023-34281126)
chr6 (54-144)||(29299147-29299237)
chr6 (51-231)||(25320109-25320289)
chr6 (51-231)||(26149802-26149982)
chr6 (58-172)||(21379306-21379420)
chr6 (51-144)||(29130394-29130487)
chr6 (276-358)||(29144589-29144671)
chr6 (263-329)||(29299359-29299425)
chr6 (51-145)||(34259146-34259240)
chr6 (276-357)||(23216647-23216728)
chr6 (89-175)||(29136409-29136495)
chr6 (51-172)||(13339137-13339258)
[»] chr7 (2 HSPs)
chr7 (71-175)||(42445421-42445525)
chr7 (111-175)||(7792973-7793037)
[»] scaffold0134 (2 HSPs)
scaffold0134 (52-145)||(17144-17237)
scaffold0134 (276-357)||(16929-17010)
[»] chr5 (5 HSPs)
chr5 (59-137)||(31788623-31788701)
chr5 (59-142)||(42405814-42405897)
chr5 (58-172)||(27174334-27174448)
chr5 (59-173)||(40548366-40548480)
chr5 (59-175)||(37512003-37512119)
[»] scaffold0054 (1 HSPs)
scaffold0054 (51-172)||(34326-34447)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 9568276 - 9568609
Alignment:
Q  28 aaaaagaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgc 127  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  9568276 aaaaagaaaggtgagcacaacctgtatatctgatgatattgccttctctattctatccaaattgccttttaaatctattaagcgatttgaatgcgttcgt 9568375  T
Q  128 aaatcatggtatct---cttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggag 224  Q
    |||||||||| |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   | |||||||||||||    
T  9568376 aaatcatggtctctgatcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcacagatatccttattacgatggag 9568475  T
Q  225 catctctgctagtaaaggaattagaacttggtaaggaagttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatcc 324  Q
    ||||||| ||  ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  9568476 catctcttcttctaaaggatttagaacttggtaaagaagttttctattctatttatggtgaaaggtttgagaacaaagtacaattagatttcacaaatcc 9568575  T
Q  325 atttgcaaaccgtttcaattttcgtatttttggt 358  Q
    ||||||||||||||||||||||||||||||||||    
T  9568576 atttgcaaaccgtttcaattttcgtatttttggt 9568609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 357
Target Start/End: Complemental strand, 9582967 - 9582638
Alignment:
Q  28 aaaaagaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgc 127  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  | ||||||||| |||||    
T  9582967 aaaaagaaaggtgagcaccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgc 9582868  T
Q  128 aaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcat 227  Q
    ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||| | ||    
T  9582867 aaagcatggtctctcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggat 9582768  T
Q  228 ctctgctagtaaaggaattagaacttggtaaggaagttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatt 327  Q
    |||||||  ||| ||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||  ||||||||||| ||||| |||     
T  9582767 ctctgctcctaagggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaaagttcaattagatttctcaaatgcata 9582668  T
Q  328 tgcaaaccgtttcaattttcgtatttttgg 357  Q
    |||| |||||||||| ||||||||||||||    
T  9582667 tgcagaccgtttcaaatttcgtatttttgg 9582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 28 - 357
Target Start/End: Complemental strand, 9588662 - 9588333
Alignment:
Q  28 aaaaagaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgc 127  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  | ||||||||| |||||    
T  9588662 aaaaagaaaggtgagcaccacctatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgc 9588563  T
Q  128 aaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcat 227  Q
    ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  | ||||||||||| | ||    
T  9588562 aaagcatggtctctcttatctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctaattctcaccaatgtccttattacgatgggggat 9588463  T
Q  228 ctctgctagtaaaggaattagaacttggtaaggaagttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatt 327  Q
    |||||||  ||| ||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||  ||||||||||| ||||| |||     
T  9588462 ctctgctcctaagggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaaagttcaattagatttctcaaatgcata 9588363  T
Q  328 tgcaaaccgtttcaattttcgtatttttgg 357  Q
    |||| |||||||||| ||||||||||||||    
T  9588362 tgcagaccgtttcaaatttcgtatttttgg 9588333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 32 - 358
Target Start/End: Complemental strand, 9594759 - 9594430
Alignment:
Q  32 agaaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaat 131  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| |||||||| ||||| |||||||||| |||||||||     
T  9594759 agaaaggtgagcaccacctatatagctgatgatatttccttctccattctatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaag 9594660  T
Q  132 catggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 231  Q
    |||||| |||||||  |||||||  |||||||||||||||||||  ||| ||||| ||||||| ||||||||||||  | |||||||| || | ||||||    
T  9594659 catggtctctcttatgtgaaaacgatcacttcatgaacatgttccgcaacaatctcttatctaattctcaccgatgtccttattacgacgggggatctct 9594560  T
Q  232 gctagtaaaggaattagaacttggtaaggaagttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatttgca 331  Q
    |||  ||||||| || ||||||||||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||    
T  9594559 gcttctaaaggatttcgaacttggtaaagacgttttctattctatttctggtgaaaggtttgagaacaatgttaaattagatttctcaaatccatatgca 9594460  T
Q  332 aaccgtttc---aattttcgtatttttggt 358  Q
    |||||||||   || |||||||||||||||    
T  9594459 aaccgtttcaaaaaatttcgtatttttggt 9594430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 9573422 - 9573742
Alignment:
Q  28 aaaaagaaaggtgagcaccaccgatatatctgatgatatt-gccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcg 126  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||    
T  9573422 aaaaagaaaggtgagcaccacctatatacctgatgatatttgccttctccattctatccaaattgcctattaaatcttttaagcgatttgaatgtgttcg 9573521  T
Q  127 caaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgt-attacgatggagc 225  Q
    ||||||||||| ||| |||  |||||||| |||||| | ||||||||| | ||| ||||| |||            |||||  | | |||||||||| ||    
T  9573522 caaatcatggtctctgttaattgaaaaccatcactttaagaacatgttttgcaacaatctctta------------cgatgtccttaattacgatggggc 9573609  T
Q  226 atctctgctagtaaaggaattagaacttggtaaggaagttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatcca 325  Q
    |||| ||||  ||||||| || ||||||||||| || ||||||||||| |||| ||||||||||||||||| |||| |||| ||||||||| ||||||||    
T  9573610 atctttgctcctaaaggattttgaacttggtaaagacgttttctattctatttatggtgaaaggtttgagatcaaattaaagttagatttctcaaatcca 9573709  T
Q  326 tttgcaaaccgtttcaattttcgtatttttggt 358  Q
      ||||||||||||||| |||||||||||||||    
T  9573710 catgcaaaccgtttcaagtttcgtatttttggt 9573742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 41 - 358
Target Start/End: Complemental strand, 9603553 - 9603233
Alignment:
Q  41 agcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatc 140  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || | ||| |||||| ||    
T  9603553 agcaccacctatatacctgatgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctc 9603454  T
Q  141 tcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctctgctagtaaa 240  Q
    ||||| |||| |||| |   || |||||||  |||| ||| ||||| |||| || |||||| |||||  | |||||||| ||  ||||||| ||  |||     
T  9603453 tcttatctgagaaccgtagttttatgaacacattctgcaacaatctcttatttaattctcatcgatgtccttattacgacgggacatctctcctcctaag 9603354  T
Q  241 ggaattagaacttggtaaggaagttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccat---ttgcaaaccgt 337  Q
    ||| ||  |||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||| |||    ||||||||||    
T  9603353 ggatttcaaacttggtcaagacgttttctattctatttctggtgaaaggtttgagaacaaagttaaaatagatttcccaaattcatatgatgcaaaccgt 9603254  T
Q  338 ttcaattttcgtatttttggt 358  Q
    || || |||||||||||||||    
T  9603253 tttaaatttcgtatttttggt 9603233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 54295840 - 54295770
Alignment:
Q  265 tttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatttgcaaacc 335  Q
    |||||||||||||| ||||||||||||| | || ||||| |||||||||||| ||||||||||||||||||    
T  54295840 tttctattccatttttggtgaaaggtttcaaaataaagttaaattagatttcccaaatccatttgcaaacc 54295770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 54296042 - 54295949
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 144  Q
    ||||| ||||||||||| ||||||||||| |||| ||| ||||| |||||||| ||||  |||||||||||||||| | |||||||| ||||||    
T  54296042 atatacctgatgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatgcgttcgtagatcatggtctctctt 54295949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 37894937 - 37895017
Alignment:
Q  57 ctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 137  Q
    |||| ||| ||||||||||||||||||||||| | ||| | |||||| | ||| |||||||||| |||| | |||||||||    
T  37894937 ctgaagatgttgccttctccattctatccaaactccctctcaaatctttgaagcgatttgaatgtgttcactaatcatggt 37895017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 34279499 - 34279321
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 150  Q
    ||||||||||||||||||||||||||||||| || ||||| ||| |||||||| | ||||| |||||||| ||| | |||||||||||||| ||| ||||    
T  34279499 atatatctgatgatattgccttctccattctttcaaaattacctcttaaatctttcaagagttttgaatgtgtttgtaaatcatggtatcttttatctga 34279400  T
Q  151 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatct 229  Q
    ||| | ||||||||||||||||||| ||||| || |  |||||| |||||| || || || ||||| ||||||||||||    
T  34279399 aaatcatcacttcatgaacatgttccacaaggatttggtatctaattctcatcgttgttcttattatgatggagcatct 34279321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 29123221 - 29123345
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 150  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||  || |||||| ||||||||||||||||| ||||||  ||||    
T  29123221 atatatctgatgatattgccttctccattctatcaaaattgcctcttaaatcttttaaacgagttgaatccgttcgcaaatcatggtctctcttgtctga 29123320  T
Q  151 aaaccctcacttcatgaacatgttc 175  Q
    | |  |||| |||||||||||||||    
T  29123321 agatactcatttcatgaacatgttc 29123345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 32745856 - 32745720
Alignment:
Q  38 gtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 137  Q
    ||||| |||| | ||||| |||||||||||||||||||||| ||||| ||| | ||| |||||||| ||||  |||||||||||||||||||||||||||    
T  32745856 gtgagtaccaactatatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggt 32745757  T
Q  138 atctcttacctgaaaaccctcacttcatgaacatgtt 174  Q
     ||||||| |||||||  |||| ||||||||||||||    
T  32745756 ctctcttatctgaaaatactcatttcatgaacatgtt 32745720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 29153062 - 29152911
Alignment:
Q  53 atatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaa 152  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||| | |||   |||||||| ||||||||||||||||  ||| || ||||||    
T  29153062 atatctgatgatattgccttctccattctctcaaaattgcctcttaaatctttcaagcattttgaatgtgttcgcaaatcatggtccctcctatctgaaa 29152963  T
Q  153 accctcacttcatgaacatgttctacaagaatcttttatctagttctcaccg 204  Q
    | | |||||||||||||||||||  ||| ||| | ||||| | |||||||||    
T  29152962 aacatcacttcatgaacatgttccgcaataatttcttatccaattctcaccg 29152911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 32973634 - 32973437
Alignment:
Q  34 aaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatca 133  Q
    |||||||||||||||  |||| |||||||| ||| ||||||  |||||||| ||||||||| |||||||| | ||| | |||||||| ||| | ||||||    
T  32973634 aaaggtgagcaccacatatatttctgatgaaatttccttctatattctatcaaaattgcctcttaaatctttcaagcgttttgaatgtgtttgtaaatca 32973535  T
Q  134 tggtatctcttacctgaaaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 231  Q
    |||| ||||||| |||||||||  |||||| ||||  |||||| ||| ||| | ||||||| |||||  ||  | || |||||| |||||||||||||    
T  32973534 tggtctctcttatctgaaaaccaacacttcgtgaaagtgttctgcaacaatttattatctaattctcttcgtggttcttattacaatggagcatctct 32973437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 29144369 - 29144485
Alignment:
Q  59 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 158  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||| | ||| |||||| ||||||||| ||||| ||||||||||||  |||| |  |||    
T  29144369 gatgatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttatttgaagatactc 29144468  T
Q  159 acttcatgaacatgttc 175  Q
    | |||||||||||||||    
T  29144469 atttcatgaacatgttc 29144485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 29149849 - 29149729
Alignment:
Q  54 tatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaa 153  Q
    |||| |||||||| |||||||||||||| || ||||||||| |||||||| ||||  ||||||||||||||||||||||||||| ||||||  |||| ||    
T  29149849 tatccgatgatatagccttctccattctctcaaaattgcctcttaaatcttttaactgatttgaatgcgttcgcaaatcatggtctctcttgtctgagaa 29149750  T
Q  154 ccctcacttcatgaacatgtt 174  Q
       ||||||||||| ||||||    
T  29149749 taatcacttcatgagcatgtt 29149729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 23216933 - 23216833
Alignment:
Q  74 tccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgt 173  Q
    ||||||||||| || || ||| |||||||| | |||||||||||||| |||||||||||||||| |||||||  ||| ||  |||| |||||||||||||    
T  23216933 tccattctatcgaagttacctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaattgataattctcatttcatgaacatgt 23216834  T
Q  174 t 174  Q
    |    
T  23216833 t 23216833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 34281023 - 34281126
Alignment:
Q  34 aaaggtgagcaccaccgatatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatca 133  Q
    ||||||||||||| |  | ||||||||||||||||||||||| ||||| || ||||||||| |||||||| | ||| | ||||| ||  |||||||||||    
T  34281023 aaaggtgagcaccgcatacatatctgatgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcgttttgagtgtcttcgcaaatca 34281122  T
Q  134 tggt 137  Q
    ||||    
T  34281123 tggt 34281126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 29299147 - 29299237
Alignment:
Q  54 tatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 144  Q
    ||||||||||||| || || |||||||| || || |||||| |||||||| ||||| | |||||||| |||||||||||||||| ||||||    
T  29299147 tatctgatgatatagctttttccattctctcaaagttgcctcttaaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctctt 29299237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 25320289 - 25320109
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 150  Q
    ||||||| |||||||| ||| | || |||||||| || |||||  |||||||| ||||| ||||| ||||  |||| ||||||||||  ||||||  |||    
T  25320289 atatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttga 25320190  T
Q  151 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 231  Q
     |||| |||||||| ||||||||||  || |||| | || || | ||||||| | || || ||||||||||| ||||||||    
T  25320189 gaaccatcacttcaagaacatgttccgcacgaatttcttttccaattctcactgttgttcttattacgatggtgcatctct 25320109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 231
Target Start/End: Complemental strand, 26149982 - 26149802
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 150  Q
    ||||||| |||||||| ||| | || |||||||| || |||||  |||||||| ||||| ||||| ||||  |||| ||||||||||  ||||||  |||    
T  26149982 atatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttatttga 26149883  T
Q  151 aaaccctcacttcatgaacatgttctacaagaatcttttatctagttctcaccgatgctcgtattacgatggagcatctct 231  Q
     |||| |||||||| ||||||||||  || |||| | || || | ||||||| | || || ||||||||||| ||||||||    
T  26149882 gaaccatcacttcaagaacatgttccgcacgaatttcttttccaattctcactgttgttcttattacgatggtgcatctct 26149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 21379420 - 21379306
Alignment:
Q  58 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccct 157  Q
    ||||||||| | |||||| |||||||| || || ||| |||||||| | ||| |||||| |||||| || |||||||||| |||||||  ||||||| ||    
T  21379420 tgatgatatagtcttctctattctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacact 21379321  T
Q  158 cacttcatgaacatg 172  Q
     | ||||||||||||    
T  21379320 tatttcatgaacatg 21379306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 29130394 - 29130487
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctt 144  Q
    ||||| || ||||||||  |||||||||||| || || |||||| |||||||| | ||| ||||||||| |||||| |||||||||| ||||||    
T  29130394 atatacctcatgatattcacttctccattctctcaaagttgcctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctctt 29130487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 29144589 - 29144671
Alignment:
Q  276 tttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatttgcaaaccgtttcaattttcgtatttttggt 358  Q
    |||| ||||| ||||||||||| || || |||||||||||   ||||||||| |||||||  | |||||||||||||||||||    
T  29144589 tttcgggtgagaggtttgagaataaggtgaaattagattttttaaatccattcgcaaacctatacaattttcgtatttttggt 29144671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 29299359 - 29299425
Alignment:
Q  263 gttttctattccatttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatttg 329  Q
    |||||||||||  || ||||||| | ||||||||| ||||| |||||||||||| ||||||||||||    
T  29299359 gttttctattctcttgctggtgagaagtttgagaaaaaagtcaaattagatttctcaaatccatttg 29299425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 34259240 - 34259146
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctta 145  Q
    ||||| || |||||||||||||||| ||||||  |||| | ||| |||| ||| | ||| |||||| ||||||||| |||||||||| |||||||    
T  34259240 atatacctcatgatattgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctctta 34259146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 23216728 - 23216647
Alignment:
Q  276 tttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatttgcaaaccgtttcaattttcgtatttttgg 357  Q
    ||||||| || | ||||||||| || || |||||||||||| ||||||||| ||||||||  ||||||||||  ||||||||    
T  23216728 tttctggggagacgtttgagaataaggtcaaattagatttctcaaatccatatgcaaaccaattcaattttcaaatttttgg 23216647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 29136409 - 29136495
Alignment:
Q  89 ttgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttc 175  Q
    |||||| |||||||| | ||| |  ||||||||||| |||||||||||| |||||||  ||||||  |||  |||||||||||||||    
T  29136409 ttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgttc 29136495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 13339137 - 13339258
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 150  Q
    ||||||| ||||| ||| ||||| | |||||||||||| | ||| |||||||| |  |  |||||  ||||||||||||||||||||  ||||||  |||    
T  13339137 atatatcagatgacatttccttcacgattctatccaaacttcctcttaaatctttgtaccgatttcgatgcgttcgcaaatcatggtcactcttatttga 13339236  T
Q  151 aaaccctcacttcatgaacatg 172  Q
    |||||  ||  |||||||||||    
T  13339237 aaaccaacatctcatgaacatg 13339258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 42445421 - 42445525
Alignment:
Q  71 ttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaaca 170  Q
    ||||||||| |||| ||||| ||| |||||||| ||||| |||||||||| ||||| ||||  |||| ||||||| ||||||||| ||| ||||||||||    
T  42445421 ttctccattatatcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaattgtggtctctcttatctgaaaaccatcatttcatgaaca 42445520  T
Q  171 tgttc 175  Q
    |||||    
T  42445521 tgttc 42445525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 7792973 - 7793037
Alignment:
Q  111 gatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctcacttcatgaacatgttc 175  Q
    ||||| |||| ||||||| ||||||||   |||||| |||||||| ||| |||||||||||||||    
T  7792973 gatttcaatgtgttcgcatatcatggtcagtcttacttgaaaaccatcatttcatgaacatgttc 7793037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 17237 - 17144
Alignment:
Q  52 tatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctctta 145  Q
    |||| |||| ||||||  ||| ||||||||||| || |||||| |||||||| | |||||||||||||||||| |||||||||||| |||||||    
T  17237 tatacctgacgatattagcttatccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctctta 17144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 17010 - 16929
Alignment:
Q  276 tttctggtgaaaggtttgagaacaaagtaaaattagatttcacaaatccatttgcaaaccgtttcaattttcgtatttttgg 357  Q
    |||||||||| ||||||||||| || || |||||||||||| ||||||||| ||||||||  ||||||||||  ||||||||    
T  17010 tttctggtgagaggtttgagaataaggtcaaattagatttctcaaatccatatgcaaaccaattcaattttcaaatttttgg 16929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 31788623 - 31788701
Alignment:
Q  59 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggt 137  Q
    ||||||||||||||||| |||||||| ||| | ||  |||||||| | ||  ||||||||||||| |||||||||||||    
T  31788623 gatgatattgccttctctattctatcaaaactccccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggt 31788701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 42405814 - 42405897
Alignment:
Q  59 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctc 142  Q
    |||||||||||||| || ||| | || ||| ||||| |||||||| | ||| |||||||| |||| || |||||||||||||||    
T  42405814 gatgatattgccttatctattatgtcgaaactgcctgttaaatctttaaagcgatttgaaagcgtacgtaaatcatggtatctc 42405897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 27174448 - 27174334
Alignment:
Q  58 tgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccct 157  Q
    |||||||||| ||||||| | |||||| ||||| ||| | |||||| | ||| |||||| |||||| ||||||||||| |  || |||  |||||| |||    
T  27174448 tgatgatattaccttctcaaatctatcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttgaaaatcct 27174349  T
Q  158 cacttcatgaacatg 172  Q
    |  ||||||||||||    
T  27174348 cttttcatgaacatg 27174334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 40548366 - 40548480
Alignment:
Q  59 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 158  Q
    |||||||||||||| ||||||||||  ||| | ||| |||||||| | ||| ||||||||||| |  | |||||||||| || | || ||||| || |||    
T  40548366 gatgatattgccttttccattctataaaaacttcctgttaaatctttgaagcgatttgaatgcataagtaaatcatggtctcacctatctgaagactctc 40548465  T
Q  159 acttcatgaacatgt 173  Q
    | ||||||| |||||    
T  40548466 agttcatgaccatgt 40548480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 37512003 - 37512119
Alignment:
Q  59 gatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctgaaaaccctc 158  Q
    ||||| ||||||||||||||| |||| ||| ||||| | |||||| | ||  |||||||||  ||  |||||||||||| ||  || | |||||||||||    
T  37512003 gatgacattgccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctcaattgcttgaaaaccctc 37512102  T
Q  159 acttcatgaacatgttc 175  Q
    | || |||| |||||||    
T  37512103 aatttatgagcatgttc 37512119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 34447 - 34326
Alignment:
Q  51 atatatctgatgatattgccttctccattctatccaaattgccttttaaatctattaagagatttgaatgcgttcgcaaatcatggtatctcttacctga 150  Q
    ||||||| || |||||| ||||| | |||||||||||| | ||| |||||||| | ||  |||||  ||||||||| ||||||||||  ||||||  |||    
T  34447 atatatcagacgatatttccttcacaattctatccaaactccctcttaaatctttgaaccgatttcgatgcgttcgtaaatcatggtcactcttatttga 34348  T
Q  151 aaaccctcacttcatgaacatg 172  Q
    |||||  ||  |||||||||||    
T  34347 aaaccaacatctcatgaacatg 34326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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