View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0270_low_1 (Length: 342)
Name: NF0270_low_1
Description: NF0270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0270_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 92 - 334
Target Start/End: Original strand, 33549091 - 33549333
Alignment:
| Q |
92 |
aaaatgcaacaaataaatgtatattactattattttgacgataaatgtatgttaatgaaaaaagaataatatttgattgttattctaaaatcacaattaa |
191 |
Q |
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| T |
33549091 |
aaaatgcaacaaataaatgtatattactattattttgacgataaatgtatgttaatgaaaaaagaataatatttgattgttattctaaaatcacaattaa |
33549190 |
T |
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| Q |
192 |
tttgagaaaaatattatatatgcactnnnnnnntagagagtgagtaataaattagttgtacttataccactaagattattaatctaaatatagtcttctt |
291 |
Q |
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| T |
33549191 |
tttgagaaaaatattataaatgcactaaaaaaatagagagtgagtaataaattagttgtacttataccactaagattattaatctaaatatagtcttctt |
33549290 |
T |
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| Q |
292 |
tgaagatagtgaagttggccactttaaagcccttcttcatctc |
334 |
Q |
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| T |
33549291 |
tgaagatagtgaagttggccactttaaagcccttcttcatctc |
33549333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 33548912 - 33548952
Alignment:
| Q |
30 |
gtgttgtccgatgtattatttattaaattgaatgaatgaag |
70 |
Q |
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| T |
33548912 |
gtgttgtccgatgtattatttattaaattgaatgaatgaag |
33548952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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