View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0271_low_1 (Length: 606)
Name: NF0271_low_1
Description: NF0271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0271_low_1 |
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| [»] scaffold0024 (4 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 2 - 406
Target Start/End: Original strand, 30494 - 30878
Alignment:
| Q |
2 |
ttttttcttatcttatcatctctaattagcttccattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctct |
99 |
Q |
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| T |
30494 |
ttttttcttatcttatcatctctaattagcttccattgaattacataatgccataa-ggtgttagcttaacgtcataacc-tcaagagataaagttctct |
30591 |
T |
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| Q |
100 |
cagggtcggctgtaaaatagtcattagtgtttttctactaataatagttatgactagtttatgctgaaatatctatttattggtttgtggtcaggtgtcc |
199 |
Q |
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| T |
30592 |
cagggtcgattgtaaaatagtcattagtgtttttttactaataatagttatgactagtt-atgctgaaatatctatttattggtttgtggtcaggtgtct |
30690 |
T |
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| Q |
200 |
tgtggaggtactcattctgttgcattatcccgagatgggcgcatattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggt |
299 |
Q |
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| T |
30691 |
tgtggaggtactcattctgttgcattaacccgagatgggcgcatattttctgtaagtagtttgctcaccatctcaatt----ttctttgccat-----gt |
30781 |
T |
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| Q |
300 |
tttgtttaatcttaaataaaagtcacaccaaatcttgatatcccctttatatattgaattattgatattatagattagtagcaattttcattctgtgaaa |
399 |
Q |
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| T |
30782 |
tttgtttaatctgaaataaaagt--caccaaaatttgatattccctttata--------tattgatattatagattagtagcagttttcattctgtgaat |
30871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 405 - 575
Target Start/End: Original strand, 30991 - 31161
Alignment:
| Q |
405 |
ggaggaaagtcactactggtcaaccaatggaggtacctgtagacatccctcctccacagaatctcggtgacgctgacggtgaagctgagggaaattggat |
504 |
Q |
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| T |
30991 |
ggaggaaagtcactactggtcaaccaatggaggtacctatagacatccctcctccacagaatctcggtgacgctgacggtgaagctgagggaaattggat |
31090 |
T |
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| Q |
505 |
agccaaactcgtcgcttgtggtggccgccatactttggcaatagtagaatggaaagatgatgaatctaaag |
575 |
Q |
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| T |
31091 |
agccaaactcgtcgcttgtggtggccgtcatactttggcaatagtagaatggaaagatgatgaatctaaag |
31161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 405 - 577
Target Start/End: Original strand, 65975 - 66149
Alignment:
| Q |
405 |
ggaggaaagtcactactggtcaaccaatggaggtacctgta--gacatccctcctccacagaatctcggtgacgctgacggtgaagctgagggaaattgg |
502 |
Q |
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| T |
65975 |
ggaggaaagtcactactggtcaaccaatggaggtacctatatagacatccctcctccacagaatctcggtgatgctgacggtgaagctgagggaaattgg |
66074 |
T |
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| Q |
503 |
atagccaaactcgtcgcttgtggtggccgccatactttggcaatagtagaatggaaagatgatgaatctaaagac |
577 |
Q |
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| T |
66075 |
atagccaaactcgtcgattgtggtggccgccatactttggcaatagtagaatggaaagatgatgaatctaaagac |
66149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 65702 - 65862
Alignment:
| Q |
242 |
atattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
341 |
Q |
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| T |
65702 |
atattttctgtaagtagttt----accatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
65797 |
T |
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| Q |
342 |
ccctttatatattgaattattgatattatagattagtagcaattttcattctgtgaaattttcgg |
406 |
Q |
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| T |
65798 |
ccctttatatattgaattattgatattatagattagtagcaattttcattctgtgaaattttcgg |
65862 |
T |
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