View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0271_low_10 (Length: 255)
Name: NF0271_low_10
Description: NF0271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0271_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34139883 - 34139643
Alignment:
| Q |
1 |
tgaagacatgagagatgatgcacttgagcctgctgatttgtatgaccggagaatgcgagttgtggatgttggaggaggaactggattcactactcttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34139883 |
tgaagacatgagagatgatgcacttgagcctgctgatttgtatgaccggagaatgcgagttgtggatgttggaggaggaactggattcactactcttggt |
34139784 |
T |
|
| Q |
101 |
atagtgaagcatgttgatgctaaaaatgttacaattcttgatcagtctcctcatcagcttgctagggctaagaagaaggaagcattgaaagaatgtaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34139783 |
atagtgaagcatgttgatgctaaaaatgttacaattcttgatcagtctcctcatcagcttgctagggctaagaagaaggaagcattgaaagaatgtaaga |
34139684 |
T |
|
| Q |
201 |
taattgaaggcgatgcagaagatcttccatttccaactgat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34139683 |
taattgaaggcgatgcagaagatcttccatttccaactgat |
34139643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 31517325 - 31517430
Alignment:
| Q |
59 |
gttgtggatgttggaggaggaactggattcactactcttggtatagtgaagcatgttgatgctaaaaatgttacaattcttgatcagtctcctcatcagc |
158 |
Q |
| |
|
||||| |||||||| || || ||||| |||||||| | ||||| || |||||||| |||||||| ||||| || |||||||||||||| |||||||||| |
|
|
| T |
31517325 |
gttgttgatgttggtggtggtactggtttcactacattgggtattgttaagcatgtcgatgctaagaatgtgactattcttgatcagtcacctcatcagc |
31517424 |
T |
|
| Q |
159 |
ttgcta |
164 |
Q |
| |
|
|||||| |
|
|
| T |
31517425 |
ttgcta |
31517430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University