View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0271_low_12 (Length: 249)
Name: NF0271_low_12
Description: NF0271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0271_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 656991 - 656746
Alignment:
| Q |
1 |
aaataccggtctctttatctgaaattttacagcccaagttcttcaaagcaatggtaaaaggattctggtgagctaaatccgtctgaaaaggcattaatat |
100 |
Q |
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| T |
656991 |
aaataccggtctctttatctgaaattttacagcccaagttcttcaaagcaatggtaaaaggattctggtgagctaaatccgtctgaaaaggcattaatat |
656892 |
T |
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| Q |
101 |
tctgattatcattaaattaagattaacaatagacaagacaagaatgttgttgtatattagtcaataatactatacacataatagaacggactcattagtt |
200 |
Q |
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| T |
656891 |
tctgattatccttaaattaagattaacaatagacaagacaagattgttgttgtatattagtcaataatactatacacataatagaacggactcattagtt |
656792 |
T |
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| Q |
201 |
taatatcaaattttactgttttccaactcactgtccctttgcttct |
246 |
Q |
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| T |
656791 |
taatatcaaattttactgttttccaactcactctcccattgtttct |
656746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 689452 - 689359
Alignment:
| Q |
20 |
tgaaattttacagcccaagttcttcaaagcaatggtaaaaggattctggtgagctaaatccgtctgaaaaggcattaatattctgattatcatt |
113 |
Q |
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| T |
689452 |
tgaaattttactacccaagttcttcaaagcaatggtgaatggattgtggtaagctaaatccgtctgaaaaagcattgatattttgattatcatt |
689359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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