View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0271_low_17 (Length: 230)

Name: NF0271_low_17
Description: NF0271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0271_low_17
NF0271_low_17
[»] scaffold0284 (1 HSPs)
scaffold0284 (1-212)||(2292-2503)
[»] chr8 (4 HSPs)
chr8 (3-212)||(36754494-36754703)
chr8 (1-206)||(41528465-41528669)
chr8 (1-58)||(43216918-43216975)
chr8 (112-180)||(1249279-1249347)
[»] scaffold0114 (1 HSPs)
scaffold0114 (5-212)||(35061-35268)
[»] chr4 (9 HSPs)
chr4 (1-212)||(6552557-6552768)
chr4 (5-212)||(6552957-6553164)
chr4 (1-212)||(312731-312952)
chr4 (93-202)||(7616762-7616872)
chr4 (88-212)||(48828061-48828185)
chr4 (129-212)||(38932787-38932870)
chr4 (129-180)||(13834511-13834563)
chr4 (29-81)||(6561023-6561075)
chr4 (164-212)||(26499431-26499479)
[»] scaffold0211 (1 HSPs)
scaffold0211 (1-212)||(19909-20120)
[»] chr5 (1 HSPs)
chr5 (1-212)||(9023388-9023599)
[»] chr2 (7 HSPs)
chr2 (1-212)||(31967293-31967504)
chr2 (88-212)||(41746338-41746462)
chr2 (83-206)||(9470617-9470740)
chr2 (40-79)||(36727631-36727670)
chr2 (118-212)||(40124305-40124400)
chr2 (88-186)||(23077824-23077922)
chr2 (26-66)||(36720129-36720169)
[»] chr1 (7 HSPs)
chr1 (1-212)||(45919675-45919886)
chr1 (1-212)||(49880199-49880412)
chr1 (112-212)||(9890556-9890656)
chr1 (93-212)||(40872562-40872681)
chr1 (127-206)||(47921932-47922011)
chr1 (1-72)||(16853665-16853736)
chr1 (5-81)||(31088751-31088829)
[»] chr3 (6 HSPs)
chr3 (1-133)||(50239968-50240103)
chr3 (115-205)||(7672492-7672582)
chr3 (115-212)||(30006165-30006262)
chr3 (88-212)||(43838601-43838725)
chr3 (151-212)||(50239909-50239968)
chr3 (1-58)||(14249233-14249290)
[»] chr6 (3 HSPs)
chr6 (86-212)||(6524990-6525116)
chr6 (101-180)||(14549247-14549326)
chr6 (129-206)||(21237315-21237392)
[»] scaffold0252 (1 HSPs)
scaffold0252 (116-212)||(17129-17225)
[»] chr7 (3 HSPs)
chr7 (127-212)||(8929603-8929689)
chr7 (127-180)||(25689137-25689190)
chr7 (25-79)||(2929478-2929532)
[»] scaffold0216 (1 HSPs)
scaffold0216 (29-81)||(29157-29209)
[»] scaffold0191 (1 HSPs)
scaffold0191 (1-58)||(11645-11702)
[»] scaffold0074 (1 HSPs)
scaffold0074 (29-79)||(32751-32801)


Alignment Details
Target: scaffold0284 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2292 - 2503
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  2292 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggacagatctagacattg 2391  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  2392 gatacatgtgaggctaaaatagtccatcaatctattaaaattttaaattgtctccgattgtacacttcattagtcaaaatagtccctaacattcaaatac 2491  T
Q  201 ttcattgatatt 212  Q
    ||||||||||||    
T  2492 ttcattgatatt 2503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 36754494 - 36754703
Alignment:
Q  3 atcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattgga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  36754494 atcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggatagatctagacattgga 36754593  T
Q  103 tatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatactt 202  Q
    || |||| ||||||| |||||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  36754594 tacatgtgaggctaagatagtccatcaatgtattaaaattttaaattgtctctgattgtatagttcattagtcaaaatggtccctaacattcaaatactt 36754693  T
Q  203 cattgatatt 212  Q
    ||||||||||    
T  36754694 cattgatatt 36754703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41528465 - 41528669
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  41528465 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggacatatctagacattg 41528564  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  41528565 gatacatgtgaggctaaaatagtacatcaatgtattaaaattttaaattgtctctgattgtacactt-attagtcaaaatagtccctaacattcaaatac 41528663  T
Q  201 ttcatt 206  Q
    ||||||    
T  41528664 ttcatt 41528669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43216918 - 43216975
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 58  Q
    ||||||||| |||||||||||  | |||| |||||| |||||||||||||||||||||    
T  43216918 acatcatcacccaaaatcttaaagcattatgtatattgatcatctcacttatatgttt 43216975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 1249347 - 1249279
Alignment:
Q  112 ggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaat 180  Q
    ||||||||| |||  | ||||||||||||||| ||||| ||  |||||||||| ||| |||||||||||    
T  1249347 ggctaaaatggtctcttaatgtattaaaatttcaaattgtcattgattgtacatttcgttagtcaaaat 1249279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 35268 - 35061
Alignment:
Q  5 catcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattggata 104  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||    
T  35268 catcatccaaaatcttagtgtattaggtatatcgatcatctaacttatatgtttcttaacatttacttttgcatccagggacaaatctagacattggata 35169  T
Q  105 tatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttca 204  Q
     |||| |||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  35168 catgtgaggctaaaatagtccatcaatgtattaaaattttaaattgtctctggttgtacacttcattagtcaaaatagtccctaacattcaaatacttca 35069  T
Q  205 ttgatatt 212  Q
    ||||||||    
T  35068 ttgatatt 35061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6552768 - 6552557
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| ||||||||    
T  6552768 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatacgttttttaacatttacttttgcatccagggacagatctagacattg 6552669  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| |||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6552668 gatacatgtgaggctaaaatagtccatcaatgtattaaagatttaaattgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatac 6552569  T
Q  201 ttcattgatatt 212  Q
    ||||||||||||    
T  6552568 ttcattgatatt 6552557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 6553164 - 6552957
Alignment:
Q  5 catcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattggata 104  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  6553164 catcatccaaaatcttagtctattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatctagggacagatctagacattggata 6553065  T
Q  105 tatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttca 204  Q
     |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  6553064 catgtgaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatacttca 6552965  T
Q  205 ttgatatt 212  Q
    ||||||||    
T  6552964 ttgatatt 6552957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 312952 - 312731
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagaca--- 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       
T  312952 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacagacagatcgagacagat 312853  T
Q  98 -------ttggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaac 190  Q
           ||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  312852 cgagacattggatacatgtgaggctaaaatagtccatcaatgtattaaaattttaaattgtctctgattgcacacttcattagtcaaaatagtccctaac 312753  T
Q  191 attcaaatacttcattgatatt 212  Q
    ||||||||||||||||||||||    
T  312752 attcaaatacttcattgatatt 312731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 7616762 - 7616872
Alignment:
Q  93 agacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattt-tctctgattgtacacttcattagtcaaaatggtccctaaca 191  Q
    ||||||| |||||||||   |||||||||||   ||| |||||||||||||||||||| ||||| |||||||| ||| |||||||||||  ||| |||||    
T  7616762 agacatttgatatatgtggagctaaaatagtttttcagtgtattaaaattttaaatttgtctctaattgtacatttcgttagtcaaaataatccttaaca 7616861  T
Q  192 ttcaaatactt 202  Q
    ||  |||||||    
T  7616862 ttagaatactt 7616872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 48828185 - 48828061
Alignment:
Q  88 gatcgagacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccct 187  Q
    |||| ||||||| |||||||||  ||||||||||| |  |||||||||  ||||||| ||||  || |||||||| ||||| ||||| ||||| ||||||    
T  48828185 gatctagacatttgatatatgtggggctaaaatagaccctcaatgtatcgaaattttcaattgcctttgattgtatacttcgttagttaaaatagtccct 48828086  T
Q  188 aacattcaaatacttcattgatatt 212  Q
    || ||  |||||| ||||| |||||    
T  48828085 aatataaaaatacgtcattaatatt 48828061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 38932870 - 38932787
Alignment:
Q  129 aatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    ||||||| ||||||||||||| |||  ||||||||| ||  ||||||||||| ||| |||||||| ||||| |||||| |||||    
T  38932870 aatgtatcaaaattttaaattgtcttcgattgtacattttgttagtcaaaatagtctctaacattaaaatatttcattaatatt 38932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 13834563 - 13834511
Alignment:
Q  129 aatgtattaaaattttaaattt-tctctgattgtacacttcattagtcaaaat 180  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||||||||||||    
T  13834563 aatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaat 13834511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 6561075 - 6561023
Alignment:
Q  29 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 81  Q
    |||||||| | ||||||||||||||||||  ||||||| |||||||| |||||    
T  6561075 aggtatattggtcatctcacttatatgttgtttaacatctacttttgtatcca 6561023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 26499479 - 26499431
Alignment:
Q  164 acttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    ||||| ||||||||||| |||| ||||||| |||||||||||| |||||    
T  26499479 acttcgttagtcaaaatagtccgtaacattaaaatacttcattaatatt 26499431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 19909 - 20120
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||    
T  19909 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcattcagggacaaatctagacattg 20008  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| ||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  20009 gatacatgtgaggttaagatagtccatcaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaatagtctctaacattcaaatac 20108  T
Q  201 ttcattgatatt 212  Q
    ||||||||||||    
T  20109 ttcattgatatt 20120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 9023599 - 9023388
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||  ||||||||    
T  9023599 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttgtatgtttcttaacatttacttttgcatccagggacaaatatagacattg 9023500  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  9023499 gatacatgtgaggctaagatagtctatcaatgtattaaaattttaaattgtctctgattgtacactttattagtcaaaatagtccctaacattcaaatac 9023400  T
Q  201 ttcattgatatt 212  Q
    ||||||||||||    
T  9023399 ttcattgatatt 9023388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31967293 - 31967504
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  31967293 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccagggacaaatctagacattg 31967392  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| |||||||| ||||| |||||| ||| |||| ||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31967393 gatacatgtgaggctaaagtagtccatcaatttataaaaaatttaagttgtctctgattgtacacttcattagtcaaaatagtccctaacattcaaatac 31967492  T
Q  201 ttcattgatatt 212  Q
    ||||||||||||    
T  31967493 ttcattgatatt 31967504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 41746338 - 41746462
Alignment:
Q  88 gatcgagacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccct 187  Q
    |||| ||||||| |||||||||  ||||||||||| |  | ||| ||| ||||||||||||| |||||||||||| ||||| ||| ||||||| ||| ||    
T  41746338 gatctagacatttgatatatgtggggctaaaatagacccttaatatatcaaaattttaaattgtctctgattgtatacttcgttattcaaaatagtctct 41746437  T
Q  188 aacattcaaatacttcattgatatt 212  Q
    |||||| |||||||||||| |||||    
T  41746438 aacattaaaatacttcattaatatt 41746462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 9470617 - 9470740
Alignment:
Q  83 ggacagatcgagacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatgg 182  Q
    |||| |||| ||||||| |||| ||||  || ||||||||||| | ||| ||| ||||||||||||| ||||| |||||| ||||  ||||| |||||      
T  9470617 ggacggatctagacatttgatacatgtggggttaaaatagtcactaaatatatcaaaattttaaattgtctctaattgtatactttgttagttaaaataa 9470716  T
Q  183 tccctaacattcaaatacttcatt 206  Q
    || |||| ||| ||||||||||||    
T  9470717 tctctaaaattaaaatacttcatt 9470740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 36727631 - 36727670
Alignment:
Q  40 tcatctcacttatatgtttcttaacatttacttttgcatc 79  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  36727631 tcatctcacatatatgtttcttaacatctacttttgcatc 36727670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 40124305 - 40124400
Alignment:
Q  118 aatagtcaatcaatgtattaaaattttaaattt-tctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    ||||||| || |||||||  |||||||||| |  ||||||||||| |||| | ||||||||||| |||| ||||||| || ||||||||| |||||    
T  40124305 aatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaatagtccataacattaaagtacttcattaatatt 40124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 23077824 - 23077922
Alignment:
Q  88 gatcgagacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccc 186  Q
    |||| |||||| ||||| ||||  ||||||||||||   ||||||||| |||||||||| || ||| |||||||  ||||  ||||||||||| |||||    
T  23077824 gatctagacatcggatacatgtggggctaaaatagttcctcaatgtatcaaaattttaagttgtctttgattgttgactttgttagtcaaaatagtccc 23077922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 36720169 - 36720129
Alignment:
Q  26 attaggtatatcgatcatctcacttatatgtttcttaacat 66  Q
    ||||||||||| |||||||||||||||||||| || |||||    
T  36720169 attaggtatatggatcatctcacttatatgttgctcaacat 36720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 45919675 - 45919886
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||    
T  45919675 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatatttcttaacatttacttttgcatccagggacggatctagacattg 45919774  T
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatac 200  Q
    |||| |||| || ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  45919775 gatacatgtgagactaaaatagtccaccaatgtattaaaattttaaattgtctctgattgtacacttcattagtcaaaataatccctaacattaaaatac 45919874  T
Q  201 ttcattgatatt 212  Q
    ||||||||||||    
T  45919875 ttcattgatatt 45919886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 49880412 - 49880199
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcg--atcatctcacttatatgtttcttaacatttacttttgcatccacggacagatcgagacat 98  Q
    |||||||||  ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||    
T  49880412 acatcatcaatcaaaatcttagtgtattaggtatatctttatcatctcacttatatgtttcttaacatttacttttgcatccagggacggatctagacat 49880313  T
Q  99 tggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaat 198  Q
    |||||| |||  || ||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  49880312 tggatacatgcgagactaaaatagtccaccaatgtatttaaattttaaattgtctctgattgtacacttcattagtcaaaatagtccctaacattaaaat 49880213  T
Q  199 acttcattgatatt 212  Q
    ||||||||||||||    
T  49880212 acttcattgatatt 49880199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 9890556 - 9890656
Alignment:
Q  112 ggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatat 211  Q
    ||||||||| |||  ||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||  ||| |||||||  |||||||| || ||||    
T  9890556 ggctaaaatggtctttcaatgtattaaaattttaaattgtctttgattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatat 9890655  T
Q  212 t 212  Q
    |    
T  9890656 t 9890656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 40872562 - 40872681
Alignment:
Q  93 agacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacat 192  Q
    ||||||| ||||||||| ||||||||||||||  | ||||||| ||||||||||||||| |   |||||||| ||| ||||||||||| || | | ||||    
T  40872562 agacatttgatatatgtgaggctaaaatagtcccttaatgtatcaaaattttaaatttttttaaattgtacaattcgttagtcaaaatagttcgttacat 40872661  T
Q  193 tcaaatacttcattgatatt 212  Q
    | |||||||| ||| |||||    
T  40872662 taaaatacttaattaatatt 40872681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 47922011 - 47921932
Alignment:
Q  127 tcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcatt 206  Q
    ||||||||| ||| ||||||||| | | |||||||||| |||||||||||||||  |||||||||||   ||||||||||    
T  47922011 tcaatgtataaaatttttaaattgtttttgattgtacatttcattagtcaaaataatccctaacattatgatacttcatt 47921932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 16853736 - 16853665
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttcttaacatttactt 72  Q
    ||||||||| |||||| ||||  | |||| |||||| ||||||||||||||||||||| | || ||||||||    
T  16853736 acatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaagatttactt 16853665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 31088751 - 31088829
Alignment:
Q  5 catcatccaaaatcttagtgtattaggtatatcgatcatctcact--tatatgtttcttaacatttacttttgcatcca 81  Q
    ||||||||||||| |||  | ||||||||||| ||||||||||||  ||||||||||| ||||  |||| |||||||||    
T  31088751 catcatccaaaatattaaggcattaggtatattgatcatctcacttatatatgtttctcaacacctactcttgcatcca 31088829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 50240103 - 50239968
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttc---ttaacatttacttttgcatccacggacagatcgagaca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| | ||||||||| |||||    
T  50240103 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgtttctaattaacatttacttttgcatcgagggacagatctagaca 50240004  T
Q  98 ttggatatatgtcaggctaaaatagtcaatcaatgt 133  Q
    |||| || |||| |||||||||||||| ||||||||    
T  50240003 ttggctacatgtgaggctaaaatagtccatcaatgt 50239968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 7672582 - 7672492
Alignment:
Q  115 taaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcat 205  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||||| ||  ||||||||||| ||| |||||||| |||||||||||    
T  7672582 taaaatagttcatcaatgtattaaaattttaaattgtctctgattgtacattttgttagtcaaaatagtctctaacattaaaatacttcat 7672492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 30006165 - 30006262
Alignment:
Q  115 taaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    ||||||||||   |||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |  | ||||||| ||||| |||||| |||||    
T  30006165 taaaatagtcccacaatgtattaaaattttaaattatctctgattgtacatttcgttagtcaaaatagctcttaacattaaaatatttcattaatatt 30006262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 43838725 - 43838601
Alignment:
Q  88 gatcgagacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccct 187  Q
    |||||| ||||| |||| ||||  ||||||||||||   ||||||||| ||||||||| ||| ||||||||| ||||| || |||||||||||  || |     
T  43838725 gatcgaaacatttgatacatgtggggctaaaatagttcctcaatgtatcaaaattttacattgtctctgattctacacatcgttagtcaaaataatctcg 43838626  T
Q  188 aacattcaaatacttcattgatatt 212  Q
    |||||| |||||||||||| |||||    
T  43838625 aacattaaaatacttcattaatatt 43838601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 50239968 - 50239909
Alignment:
Q  151 tctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    ||||||||||||||||| |||||||||||| ||||  ||||||||||||||| |||||||||    
T  50239968 tctctgattgtacactttattagtcaaaatagtcc--aacattcaaatacttaattgatatt 50239909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14249233 - 14249290
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 58  Q
    ||||||||| |||||| ||||  |||||| |||||| | |||||||||||||||||||    
T  14249233 acatcatcacccaaaaccttaaagtattatgtatattggtcatctcacttatatgttt 14249290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 6525116 - 6524990
Alignment:
Q  86 cagatcgagacattggatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtcc 185  Q
    |||||| ||||||| |||| ||||  | ||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||| || |||||||| ||||    
T  6525116 cagatctagacatttgatacatgtgggactaaaatagtccatcaatgtatcaaaattttaaattgtctttgattatacacttcgtttgtcaaaatagtcc 6525017  T
Q  186 ctaacattcaaatacttcattgatatt 212  Q
     ||||||| |||||||||||| |||||    
T  6525016 gtaacattaaaatacttcattaatatt 6524990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 14549326 - 14549247
Alignment:
Q  101 gatatatgtcaggctaaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaat 180  Q
    |||||||||  | ||||||||||   ||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  14549326 gatatatgtgggactaaaatagtagctcaatgtattaaaatttcaaattctccctgattgtacacttcattagtcaaaat 14549247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 21237392 - 21237315
Alignment:
Q  129 aatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcatt 206  Q
    ||||||| ||||||||||||| |||||||||||| | ||| ||||||||| |  | ||||||||| ||||||||||||    
T  21237392 aatgtatcaaaattttaaattgtctctgattgtatatttcgttagtcaaattaattcctaacattaaaatacttcatt 21237315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 17129 - 17225
Alignment:
Q  116 aaaatagtcaatcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    |||||||||  ||||||||| ||||||||||||| ||| |||||||||||  | ||||||||||| |||| ||||||| ||||||||| || |||||    
T  17129 aaaatagtctttcaatgtatcaaaattttaaattgtctttgattgtacacagcgttagtcaaaatagtccataacattaaaatacttcgttaatatt 17225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 8929689 - 8929603
Alignment:
Q  127 tcaatgtattaaaattttaaattt-tctctgattgtacacttcattagtcaaaatggtccctaacattcaaatacttcattgatatt 212  Q
    |||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||  ||| |||||||  |||||||| || |||||    
T  8929689 tcaatgtattaaaattttaaatttgtctcagattgtacatttcgttagtcaaaataatccttaacattagaatacttcgttaatatt 8929603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 25689190 - 25689137
Alignment:
Q  127 tcaatgtattaaaattttaaattttctctgattgtacacttcattagtcaaaat 180  Q
    ||||| ||||||||||||||||| ||||||||| |||| | |||||||||||||    
T  25689190 tcaatatattaaaattttaaattatctctgattatacattccattagtcaaaat 25689137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 2929532 - 2929478
Alignment:
Q  25 tattaggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc 79  Q
    |||||||||| | | ||||||||| ||||||||||||||||| ||||||| ||||    
T  2929532 tattaggtatcttggtcatctcacatatatgtttcttaacatctacttttacatc 2929478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29157 - 29209
Alignment:
Q  29 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatcca 81  Q
    |||||||| ||||||||||||||||||||  ||||||| ||||||||||||||    
T  29157 aggtatattgatcatctcacttatatgttgtttaacatctacttttgcatcca 29209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11702 - 11645
Alignment:
Q  1 acatcatcatccaaaatcttagtgtattaggtatatcgatcatctcacttatatgttt 58  Q
    ||||||||| |||||| ||||  |||||| |||||| |||||||||||||||||||||    
T  11702 acatcatcacccaaaaccttaaagtattatgtatattgatcatctcacttatatgttt 11645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 32801 - 32751
Alignment:
Q  29 aggtatatcgatcatctcacttatatgtttcttaacatttacttttgcatc 79  Q
    |||||||||  ||||||||||||||||||||||||||| | || |||||||    
T  32801 aggtatatcagtcatctcacttatatgtttcttaacatatgctcttgcatc 32751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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