View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0271_low_6 (Length: 310)
Name: NF0271_low_6
Description: NF0271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0271_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 90 - 310
Target Start/End: Original strand, 39865346 - 39865565
Alignment:
| Q |
90 |
cagtcctgagcatgagagttgagttagatcaaatcgaaattctaaacaagtgagagtatattagcagtctccggcaggcatttttgatacatgtaggatg |
189 |
Q |
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| T |
39865346 |
cagtcctgagcatgagagttgagttagatcaaatcgaaattctaaacaagtgagagtatattagcagtctccggcaggcatttttgatacatgtaggatg |
39865445 |
T |
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| Q |
190 |
tagctgatttcacctagtgggaaaaagctttggttgttgtagacgtagtagtagtatgttagccagttgtaactttgagagtgtattaacaaatgaaacg |
289 |
Q |
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| T |
39865446 |
tagctgatttcacctagtgggaaaaagctttggttgttgtagacgtagtagta-tatgttagccagttgtaactttgagagtgtattaacaaatgaaacg |
39865544 |
T |
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| Q |
290 |
ttgttgcttgctaatatactg |
310 |
Q |
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| T |
39865545 |
ttgttgcttgctaatatactg |
39865565 |
T |
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