View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272-INSERTION-1 (Length: 738)
Name: NF0272-INSERTION-1
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272-INSERTION-1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 276 - 541
Target Start/End: Original strand, 23873057 - 23873325
Alignment:
| Q |
276 |
aaccattgtgatattcaaattaagctatcaagc---ttatgagtcattattcaaatttagaatatgattttaggtgcagcaatgaacaataaagttacca |
372 |
Q |
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| T |
23873057 |
aaccattgagatattcaaattaagctatcaagcaccttataagtcattattaaaatttagaatatgattttaggtgcagcaatgaacaataaagttacca |
23873156 |
T |
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| Q |
373 |
tttggagccagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagnnnnnnntgcacattctatggaattggatttcagtg |
472 |
Q |
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| T |
23873157 |
tttggagcaagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagaaaaaaatgcacattctatggaattggatttcagtg |
23873256 |
T |
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| Q |
473 |
ttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc |
541 |
Q |
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| T |
23873257 |
ttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc |
23873325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 23872788 - 23873003
Alignment:
| Q |
7 |
aaaataatgagaaggcttgtcaaagagaagatggtggaaaagattaaggaaaataattccctaacaaaatctaacaaattttaaaatcattagcaaataa |
106 |
Q |
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| T |
23872788 |
aaaataatgagaaggcttgtcaaagagaagatggtggaaaagattaaggaaaataattccctaacaaaatctaacaaattttaaaatcattagcaaataa |
23872887 |
T |
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| Q |
107 |
tgtaatgtgctttaatggttcagatgtcaccatctaggtcatgagtattaatttacatgtttgttattttagtatatgttgaaattggtgtttgagaata |
206 |
Q |
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| T |
23872888 |
tgtaatgtgctttaatggttcatatgtcaccatctaggtcatgagtattaatttacatgtttgttattttagtatatgtttaaattggtgtttgagaata |
23872987 |
T |
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| Q |
207 |
aaatttgataattata |
222 |
Q |
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| T |
23872988 |
aaatttgataattata |
23873003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 648 - 738
Target Start/End: Original strand, 23874013 - 23874103
Alignment:
| Q |
648 |
atcaaagccaatccacgcccgcaccaatggccaaagagagccaaaggttctgcacgttaggaacaagtgntgagcatcctcaacatgacca |
738 |
Q |
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| T |
23874013 |
atcaaagccaatccacgcccacaccaacggccaaagagagccgaaggttctgcacgttaggaacaagtgttgagcatcctcaacatgacca |
23874103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 605
Target Start/End: Original strand, 23873343 - 23873375
Alignment:
| Q |
573 |
atgtgtcgatataaaatttcttatgtatataaa |
605 |
Q |
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| T |
23873343 |
atgtgtcgatataaaatttcttatgtatataaa |
23873375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 34320549 - 34320660
Alignment:
| Q |
30 |
agagaagatggtggaaaagattaaggaaaataattccctaacaaaatctaacaaattttaaaatcattagcaaataatgtaatgtg-ctttaatggttca |
128 |
Q |
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| T |
34320549 |
agagaagatggtggaaaagatgaag---aaaaattcccaaacaaagtccaacactttctaaaatcactagcaaaaaatgtaatgtgattttgatggctca |
34320645 |
T |
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| Q |
129 |
gatgtcaccatctag |
143 |
Q |
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| T |
34320646 |
tatttcaccatctag |
34320660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 34320725 - 34320765
Alignment:
| Q |
182 |
atgttgaaattggtgtttgagaataaaatttgataattata |
222 |
Q |
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| T |
34320725 |
atgttgaaattagtgtttgagaacaaaatttgataattata |
34320765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 648 - 738
Target Start/End: Original strand, 42246201 - 42246291
Alignment:
| Q |
648 |
atcaaagccaatccacgcccgcaccaatggccaaagagagccaaaggttctgcacgttaggaacaagtgntgagcatcctcaacatgacca |
738 |
Q |
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| T |
42246201 |
atcaaagccaatccacgcccacaccaacggccaaagagagttgaaggttctgcacgttaggaacaggtgctgagagccctaaacatgacca |
42246291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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