View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272-INSERTION-10 (Length: 707)
Name: NF0272-INSERTION-10
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272-INSERTION-10 |
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Alignment Details
Target: chr6 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 8 - 672
Target Start/End: Original strand, 30128399 - 30129066
Alignment:
| Q |
8 |
tcttagtcattcgatcgagcaagattgtctgaggccttgtttctcaggttctgtttctggtggttgttttgctgttgtactgtcttgttttgtggccttc |
107 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128399 |
tcttagtcattcgaccgagcaagattgtctgaggccttgtttctcaggttctgtttctggtggttgttttgctgttgtactgtcttgttttgtggccttc |
30128498 |
T |
|
| Q |
108 |
acggggttctggtttcggctacaacatgctgtgtttgtctgttttgcttactatgggtttcgggnnnnnnnnnnn--gtatcgatgttttgccagtttca |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
30128499 |
acggggttctggtttcggctacaacatgctgtgtttgtctgttttgcttactatgggtttcgggttgttttttttttgtatcgatgttttggtagtttca |
30128598 |
T |
|
| Q |
206 |
gcatcccagtagtggttgttttttgctgtgtttctcttcgggtattccgtctatataccacatccgatgttttgtatttccctgtgtggcaagattggtg |
305 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128599 |
gcatcctagtagtggttgttttttgctgtgtttctcttcgggtattccgtctatataccacatccgatgttttgtatttccctgtgtggcaagattggtg |
30128698 |
T |
|
| Q |
306 |
catctcgtgcaggttttgcttttcaatatactttgctgatagcaaaaatgaatgtgaaatttatgcaaataatataacttgttctgcattaagcttttag |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30128699 |
catctcgtgcaggttttgcttttcaatatactttgctgatagcaaaaatgaatgtgaaatttatgcaaataatataatttgttctgcattaagcttttag |
30128798 |
T |
|
| Q |
406 |
taaataagtggctgcattgcataagcattaaattgtgattttctaggttgaactctaaagaacaataggttcaaataattgacttttctgctgttaataa |
505 |
Q |
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| T |
30128799 |
taaataagtggatacattgcataagcattaaattgtgattttctaggttgaactctaaagaacaataggttcaaataattgacttttctgctgttaataa |
30128898 |
T |
|
| Q |
506 |
tgcagttattgttac-taagtggaggcattgcattaaatgtttaaatagataagtagctcccaattgattaaggcttgattgacaaggtaaaagttttgg |
604 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128899 |
tgcagttattgttacttaagtggaggcattgcattaaatgtttaaatagataagtagctcccaattgattaaggcttgattgacaaggtaaaagttttgg |
30128998 |
T |
|
| Q |
605 |
ttaggtgaacataagcgacttcatgagaaatccatggtttgtggattagttgctttatgcattgtcat |
672 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30128999 |
ttaggtgaacataagcgacttcatgagaaatccatggtttgtggattagttgctttatgcattgtcat |
30129066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 704
Target Start/End: Original strand, 30129785 - 30129820
Alignment:
| Q |
669 |
tcatccatggtattattgactattactcaattttta |
704 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
30129785 |
tcatccatggtattgttgactattactcaattttta |
30129820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 595
Target Start/End: Complemental strand, 4365469 - 4365351
Alignment:
| Q |
479 |
aataattgacttttctgctgttaataatgcagttattgttact-aagtggaggcattgcattaaatgtttaaatagataagtagctc-ccaattgattaa |
576 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| ||||| | |||| || ||||||||| | | |||||| ||||||||||||| ||||||| | |
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| T |
4365469 |
aataattggcttttgtgctgttaataatgcagttactgttaatgaagttgaagcattgcatgagctatttaaaaagataagtagctctgtaattgatgat |
4365370 |
T |
|
| Q |
577 |
ggcttgattgacaaggtaa |
595 |
Q |
| |
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||||||||| ||||||||| |
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|
| T |
4365369 |
ggcttgattcacaaggtaa |
4365351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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