View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272-INSERTION-13 (Length: 660)
Name: NF0272-INSERTION-13
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272-INSERTION-13 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 85 - 388
Target Start/End: Original strand, 22148557 - 22148860
Alignment:
| Q |
85 |
aatcacatggccatggcgatggaaaaaggtggggttgtgggtgacgatgacgacgaagatgatgatgaagatggtggtcttgtcattgtagctggtgagc |
184 |
Q |
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| T |
22148557 |
aatcacatggccatggcgatggaaaaaggtggggttgtgggtgacgatgacgacgaagatgatgatgaagatggtggccttgtcattgtagctggtgagc |
22148656 |
T |
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| Q |
185 |
ttaatcagggtttggaagaccaagagtggggggagagtgccaatgttccggtggatggcgagagaaaggatgcggtggaaccggggaaggcagtcgcggg |
284 |
Q |
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| T |
22148657 |
ctaatcagggtttggaagaccaagagtggggggaaagtgccaatattccggtggatggtgagagaaaggatgccgtggaaccggggaagccagtcgcggg |
22148756 |
T |
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| Q |
285 |
tcccgctgctggtggcattcctgttgttcctaaagttggttatggtagtcatgctcatgggtatcatccatttcattcccagtttaaggttagtttcttc |
384 |
Q |
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| T |
22148757 |
tcctgctgctggtggcattcctgttgttcctaaagttggttatggtaatcatgctcatgggtatcatccatttcattcccagtttaaggttagtttcttc |
22148856 |
T |
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| Q |
385 |
aaag |
388 |
Q |
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|||| |
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| T |
22148857 |
aaag |
22148860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 422 - 656
Target Start/End: Original strand, 22148890 - 22149122
Alignment:
| Q |
422 |
atagtatgaatgaatgggttg-----agttgagttgtatatgcttggctttgtagtaattgttagacagttttaaattgaagaaattttgatcctgcttt |
516 |
Q |
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| T |
22148890 |
atagtatgaatgaatgggttgagttgagttgagttgtatatgcttggctttgtagtaattgttagaca-ctttaaattgaagaaa-tttgatcctgcttt |
22148987 |
T |
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| Q |
517 |
atgctgtgaaaagctgaaaaaccaagtttgaagagctaaatggatttaactttgagct-taagtttaatataatgatggaagcccctaagattggggtta |
615 |
Q |
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| T |
22148988 |
atgttgttaaaagctgaaaaa-caagtttgaagagctaaatggatttaactttgagctataagttt-atataatgatggaag-ccctaagatt-gggtta |
22149083 |
T |
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| Q |
616 |
aaccctcttttcttgtattggtacacccaaataaatatatg |
656 |
Q |
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| T |
22149084 |
aa-cctcttttcttgtatt-gtacacccaaataaatatatg |
22149122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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