View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0272-INSERTION-4 (Length: 444)

Name: NF0272-INSERTION-4
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0272-INSERTION-4
NF0272-INSERTION-4
[»] chr1 (2 HSPs)
chr1 (8-147)||(31832746-31832883)
chr1 (264-384)||(31832994-31833114)
[»] chr6 (1 HSPs)
chr6 (122-158)||(31417337-31417373)
[»] chr3 (4 HSPs)
chr3 (259-305)||(16675905-16675951)
chr3 (126-160)||(32622402-32622436)
chr3 (131-160)||(29222439-29222468)
chr3 (128-160)||(52431228-52431260)
[»] chr8 (1 HSPs)
chr8 (131-160)||(28732765-28732794)
[»] chr4 (4 HSPs)
chr4 (127-160)||(30866352-30866385)
chr4 (127-160)||(40258204-40258237)
chr4 (121-154)||(41010203-41010236)
chr4 (128-160)||(33860580-33860612)
[»] chr2 (2 HSPs)
chr2 (259-312)||(42607420-42607473)
chr2 (126-158)||(30974030-30974062)
[»] chr7 (1 HSPs)
chr7 (126-154)||(34654565-34654593)
[»] chr5 (4 HSPs)
chr5 (128-160)||(7927355-7927387)
chr5 (126-158)||(30776634-30776666)
chr5 (130-158)||(34080331-34080359)
chr5 (126-154)||(41460114-41460142)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 31832746 - 31832883
Alignment:
Q  8 agaccaataattatggctctcatttaagttgtcaaatctatgtgtaccatcaaggatgcagtcatgcaacctctctataagtcttttatttagnnnnnnn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  31832746 agaccaataattatggctctcatttaagttgtcaaatctatgtgtaccatcaaggatgcagtcatgcaacctctctataagtcttttatttag--aaaaa 31832843  T
Q  108 ntaaaacctcaactaaaattgagaaatgatatttatacaa 147  Q
     |||||||||||||||||||||||||||||||||||||||    
T  31832844 ataaaacctcaactaaaattgagaaatgatatttatacaa 31832883  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 264 - 384
Target Start/End: Original strand, 31832994 - 31833114
Alignment:
Q  264 ttgacacaaaagttatcttcaaatgattatacaaatatcattcctcaataaaatttgtggagacttttatttccaaatatttataagattttcttatccc 363  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31832994 ttgacacaaaagttatcttcaaataattatacaaatatcattccttaataaaatttgtggagacttttatttccaaatatttataagattttcttatcca 31833093  T
Q  364 acactcaatctctcatgcatc 384  Q
    |||||||||||||||||||||    
T  31833094 acactcaatctctcatgcatc 31833114  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 31417373 - 31417337
Alignment:
Q  122 aaaattgagaaatgatatttatacaatcattttatga 158  Q
    ||||| |||||||||||||||||||||||||||||||    
T  31417373 aaaatagagaaatgatatttatacaatcattttatga 31417337  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 16675951 - 16675905
Alignment:
Q  259 gaaggttgacacaaaagttatcttcaaatgattatacaaatatcatt 305  Q
    |||||||| ||||||||||||| |||||| ||| |||||||||||||    
T  16675951 gaaggttgtcacaaaagttatcatcaaataattgtacaaatatcatt 16675905  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 160
Target Start/End: Complemental strand, 32622436 - 32622402
Alignment:
Q  126 ttgagaaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||||||||||||||||| |||||    
T  32622436 ttgagaaatgatatttatacaatcattttttgata 32622402  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 160
Target Start/End: Complemental strand, 29222468 - 29222439
Alignment:
Q  131 aaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||||||||||||||||||    
T  29222468 aaatgatatttatacaatcattttatgata 29222439  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 52431260 - 52431228
Alignment:
Q  128 gagaaatgatatttatacaatcattttatgata 160  Q
    ||||||| |||||||||||||||||||||||||    
T  52431260 gagaaataatatttatacaatcattttatgata 52431228  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 160
Target Start/End: Original strand, 28732765 - 28732794
Alignment:
Q  131 aaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||||||||||||||||||    
T  28732765 aaatgatatttatacaatcattttatgata 28732794  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 30866352 - 30866385
Alignment:
Q  127 tgagaaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||| ||||||||||||||||||    
T  30866352 tgagaaatgatatttgtacaatcattttatgata 30866385  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 40258204 - 40258237
Alignment:
Q  127 tgagaaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||||||||| ||||||||||||    
T  40258204 tgagaaatgatatttatacaaccattttatgata 40258237  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 41010236 - 41010203
Alignment:
Q  121 taaaattgagaaatgatatttatacaatcatttt 154  Q
    |||||| |||||||||||||||||||||||||||    
T  41010236 taaaatagagaaatgatatttatacaatcatttt 41010203  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 33860612 - 33860580
Alignment:
Q  128 gagaaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||||||||||||||| |||||    
T  33860612 gagaaatgatatttatacaatcattttttgata 33860580  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 42607473 - 42607420
Alignment:
Q  259 gaaggttgacacaaaagttatcttcaaatgattatacaaatatcattcctcaat 312  Q
    |||||||| |||||||||| || ||| |||||| ||||||||||||| ||||||    
T  42607473 gaaggttgtcacaaaagttgtcatcatatgattgtacaaatatcattactcaat 42607420  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 30974062 - 30974030
Alignment:
Q  126 ttgagaaatgatatttatacaatcattttatga 158  Q
    |||||||||||||||| ||||||||||||||||    
T  30974062 ttgagaaatgatatttttacaatcattttatga 30974030  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 34654565 - 34654593
Alignment:
Q  126 ttgagaaatgatatttatacaatcatttt 154  Q
    |||||||||||||||||||||||||||||    
T  34654565 ttgagaaatgatatttatacaatcatttt 34654593  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 7927355 - 7927387
Alignment:
Q  128 gagaaatgatatttatacaatcattttatgata 160  Q
    ||||||||||||||||||||||||||| |||||    
T  7927355 gagaaatgatatttatacaatcattttgtgata 7927387  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 30776634 - 30776666
Alignment:
Q  126 ttgagaaatgatatttatacaatcattttatga 158  Q
    |||||||||||||||||||||| ||||||||||    
T  30776634 ttgagaaatgatatttatacaaccattttatga 30776666  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 158
Target Start/End: Complemental strand, 34080359 - 34080331
Alignment:
Q  130 gaaatgatatttatacaatcattttatga 158  Q
    |||||||||||||||||||||||||||||    
T  34080359 gaaatgatatttatacaatcattttatga 34080331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 41460114 - 41460142
Alignment:
Q  126 ttgagaaatgatatttatacaatcatttt 154  Q
    |||||||||||||||||||||||||||||    
T  41460114 ttgagaaatgatatttatacaatcatttt 41460142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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