View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272-INSERTION-6 (Length: 639)
Name: NF0272-INSERTION-6
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272-INSERTION-6 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 7 - 512
Target Start/End: Original strand, 30393330 - 30393835
Alignment:
| Q |
7 |
ataatcattccatggaattggagtccaataatatagattttattaaagtaacagaatcacctaccaataacttgttacaagtactggtatgcgaagaaca |
106 |
Q |
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| T |
30393330 |
ataatcattccatggaattggagtccaataatatagattttattaaagtaacagaatcacctaccaataactagttacaagtactggtatgcgaagaaca |
30393429 |
T |
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| Q |
107 |
ccatactttgttcaattgtttcaaaaaatacacaaggcattttaaacaacaacaatgatatgacaaaagagattaacctaccataccaagaactagtaac |
206 |
Q |
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| T |
30393430 |
ccatactttgttcaattgtttcaaaaaatacacaaggcattttaaacaacaacaatgatatgacaaaagagattaacctaccataccaagaactagtaac |
30393529 |
T |
|
| Q |
207 |
aaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393530 |
aaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaac |
30393629 |
T |
|
| Q |
307 |
taagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtgatggtgatggt |
406 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393630 |
taagaaaaccaaaacctgttgtttctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtgatggtgatggt |
30393729 |
T |
|
| Q |
407 |
ggagtgtgtgaggtacttgcatgatcaagrgagggtgcacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcag |
506 |
Q |
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| T |
30393730 |
ggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcag |
30393829 |
T |
|
| Q |
507 |
catatg |
512 |
Q |
| |
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|||||| |
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| T |
30393830 |
catatg |
30393835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 206 - 512
Target Start/End: Original strand, 30407125 - 30407429
Alignment:
| Q |
206 |
caaaatgttggtatggaatttatataaagacactagagtttgtttcaatgagtatctagaaaatttaaaatgacaataattggctaaagaccttccaaaa |
305 |
Q |
| |
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|||||| ||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
30407125 |
caaaatattggtatggaaattgtataaagacactagtgt--gtttcaatgagtatctagaaaatttaaaatgataatgattggctaaagaccttccaaaa |
30407222 |
T |
|
| Q |
306 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtgatggtgatgg |
405 |
Q |
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| T |
30407223 |
ctaagaaaaccaaaacctgttgttgctaatagctataaaaatgagattatgaagggaaattttgcatgacacattgatagatggattgtgatggtgatgg |
30407322 |
T |
|
| Q |
406 |
tggagtgtgtgaggtacttgcatgatcaagrgagggtgcacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgca |
505 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30407323 |
tggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagaaggtgcacatgca |
30407422 |
T |
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| Q |
506 |
gcatatg |
512 |
Q |
| |
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||||||| |
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|
| T |
30407423 |
gcatatg |
30407429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 456 - 639
Target Start/End: Original strand, 30393725 - 30393909
Alignment:
| Q |
456 |
atggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatggtggagtgtgcgaggtacttgcatgatcaagagagggtgcaca |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30393725 |
atggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagagggtgcaca |
30393824 |
T |
|
| Q |
556 |
tgcagcatatgaagattcttcattcagcgcctgtttgccc-ttaagaatcttgtatccatatccctcaactgctgccctgaaagg |
639 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393825 |
tgcagcatatgaagattcttcattcagcgcctgtttgccctttaagaatcttgtatccatatccctcaactgctgccctgaaagg |
30393909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 456 - 638
Target Start/End: Original strand, 30407319 - 30407502
Alignment:
| Q |
456 |
atggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatggtggagtgtgcgaggtacttgcatgatcaagagagggtgcaca |
555 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
30407319 |
atggtggagtgtgtgaggtacttgcatgatcaagagagggtgcacatgcagcatatggtggagtgtgtgaggtacttgcatgatcaagagaaggtgcaca |
30407418 |
T |
|
| Q |
556 |
tgcagcatatgaagattcttcattcagcgcctgttt-gcccttaagaatcttgtatccatatccctcaactgctgccctgaaag |
638 |
Q |
| |
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||||||||||||||||||||| |||| | ||||||| | ||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
30407419 |
tgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatccatatccctcaactgctgtcctgaaag |
30407502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 30407021 - 30407080
Alignment:
| Q |
29 |
gtccaataatatagattttattaaagtaacagaatcacctaccaataacttgttacaagt |
88 |
Q |
| |
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|||| ||||||||||| | || |||||||| |||||||||||||||||| ||||||||| |
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|
| T |
30407021 |
gtccgataatatagatacttttcaagtaacaaaatcacctaccaataactagttacaagt |
30407080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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