View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272-INSERTION-7 (Length: 727)
Name: NF0272-INSERTION-7
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272-INSERTION-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 7 - 727
Target Start/End: Complemental strand, 20607729 - 20607004
Alignment:
| Q |
7 |
agcaagagccaatatcatattgaaaaccatgataatattgagaatcatgacaatattgagaaagattgtgttgag---------gtggttgaacattctc |
97 |
Q |
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| T |
20607729 |
agcaagagccaatatcatattgaaaaccatgataatattgagaatcatgacaatattgagaaagattgtgttgagagtgttgaggtggttgaacattctc |
20607630 |
T |
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| Q |
98 |
tcatgaattatgactctgataatgtgagcagattggtaataatttttt-gtgctcnnnnnnntgaccattgagagtttcttccttagcataattgcttga |
196 |
Q |
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| T |
20607629 |
tcatgaattatgactctgataatgtgagcagattggtaatcatttttttgtgctcaaaaaaattactattgagagtttcttccttagcataattgcttga |
20607530 |
T |
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| Q |
197 |
aaaacaaaaattactattgagagctgatagccgaatactcggttaacttttaagttggacaataaattggcaactttcaagagctgaatacttgaattat |
296 |
Q |
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| T |
20607529 |
aaaacaaaaattactattgagagctgatagccgaatactcggttaacttttaagttggacaataaattggcaactttcaagagctgaat--------tat |
20607438 |
T |
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| Q |
297 |
atactactaagtattaaactattggtacnnnnnnnngttagtcataaactaacttttcctagattacacttttctcttccataaatagtatacttggatt |
396 |
Q |
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| T |
20607437 |
atactactaagcattaaactattggtacttttttttgttagtcataaactaacttttcctagattacacttttctcttccataaatagtatacttgggtg |
20607338 |
T |
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| Q |
397 |
gtttgcgttgttcattttgaatgagttgaatctctgcatctgactttatcgttgtggactt-cacaccattttttgttaagtttttgagtgtatggtaca |
495 |
Q |
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| T |
20607337 |
gtttgcgttgttcattttgaatgagttgaatctctgcatctgactttatcgttgtggactttcacaccattttttgttaagtttttgagtgaatggtaca |
20607238 |
T |
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| Q |
496 |
tataacttcggttactgttcattgtatgtataaaaacattcacatattgtacatttttccttgatttgatttcctgctttgtcaaagtagcaaaagttgt |
595 |
Q |
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| T |
20607237 |
tataacttcggttagtgttcattgtatgtataaaaacattcacatattgtacatttttccttgatttgaattcctgctttgtcaaagtagaaaaagttgt |
20607138 |
T |
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| Q |
596 |
aagaaaagtatttagagttcggt--tgtcaaacaatattcagtgcttgttttataaagctagctgaagacgacttttaactcgtactttagaagcacatc |
693 |
Q |
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| T |
20607137 |
aagaaaagtatttagagttcggttatgtcaaacaatattcagtgcttgttttataaagctagctgaagatgacttttaactcgtactttagaagcacatc |
20607038 |
T |
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| Q |
694 |
tggaaaacaaacacagc-tttttcatctagatttg |
727 |
Q |
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| T |
20607037 |
cggaaaac-aacacagcttttttcatctagatttg |
20607004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 645
Target Start/End: Complemental strand, 20638637 - 20638472
Alignment:
| Q |
481 |
tgagtgtatggtacatataacttcggttactgttcattgtatgtataaaaacattcacatattgtacatttttccttgatttgatttcctgc-tttgtca |
579 |
Q |
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| T |
20638637 |
tgagtttatggtgcatttaacttaggttagtgttcattgtatatatataaatgctgacatattgtatattttt-ctggatttgaattcctgcttttgtta |
20638539 |
T |
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| Q |
580 |
aagtagcaaaagttgtaagaaaagtatttagagttcggt--tgtcaaacaatattcagtgcttgtttt |
645 |
Q |
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| T |
20638538 |
atgtagcaaaaattg-aaaaataatatttagagtttggttatgccaaacaatatccagtgtttgtttt |
20638472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 468 - 529
Target Start/End: Complemental strand, 20619693 - 20619633
Alignment:
| Q |
468 |
tttgttaagtttttgagtgtatggtacatataacttcggttactgttcattgtatgtataaa |
529 |
Q |
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| T |
20619693 |
tttgttaa-tttttgagtttatggtatatttaacttcggttagtgttcattgtatatataaa |
20619633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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