View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF0272-INSERTION-8 (Length: 750)
Name: NF0272-INSERTION-8
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: chr5 (Bit Score: 617; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 35 - 740
Target Start/End: Complemental strand, 32264995 - 32264295
Alignment:
| Q | 35 | accgcagaagacagtttcaatgctatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttacacttacctgttccaaggtcaatc | 134 | Q |
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| T | 32264995 | accgcagaagacagtttcaacggtatcaacgaactcttgtttgtctctgataacccaattaatcttattgctgttacacttacctgttccaaggtcaatc | 32264896 | T |
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| Q | 135 | ataatgtggagttggatttcatcttctcgtgattgatcaatatattttcatcttttaaaatatgatcaatttaaactataagaaaaatcaaatattatat | 234 | Q |
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| T | 32264895 | ataatgtggagttggatttcatcttctcgtgattgatcaatat--tttcatcttttaaaatatgattaatttaaactataagaaaaatcaaatattatac | 32264798 | T |
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| Q | 235 | agttacgtgcagttatttgcatcttataattttatctactattattatttgtgtcacaataatcattggaatactttttctatcaaaataaaaaataatc | 334 | Q |
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| T | 32264797 | agttacttgcaattatttgcatcttataattttatctactattatt---tgtgtcacaataatcattggaatactttttctatcaaaataaaaaataatc | 32264701 | T |
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| Q | 335 | atagaaaaagtattcaatacaggttaaaaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaaatttgtgtag | 434 | Q |
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| T | 32264700 | atagaaaaagtattcaatacaggttataaacaagttgtagattcaaccaagtccctctcccccttaatgttggtcttagtttaagggaaaatttgtgtag | 32264601 | T |
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| Q | 435 | ctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccctgccctgatgactgcacggagcactataatgtgttgagcc | 534 | Q |
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| T | 32264600 | ctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaacctcgccctgatgactgcacggagcactataatgtgttgagcc | 32264501 | T |
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| Q | 535 | ccgagaaacatttgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcattatatatgtgtctgtgcttatgggaaaatg | 634 | Q |
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| T | 32264500 | ccgagaaacatttgataagccagaacaatccaaccgtagtgtcgcaacatctttgatattgtgtactcattatatatgcgtctgtgcttatgggaaaatg | 32264401 | T |
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| Q | 635 | ccatgacggaaacaccatataatccagctaattccagtataaacaaggacattcttgcggccattgacattgatgctcttgactaatgggcgtctaaaat | 734 | Q |
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| T | 32264400 | ccatgacggaaacaccatataatccagctaattccagtataaacaaggacattcttgtggccattgacattgatgctcttgactaatgggcgtccaaaat | 32264301 | T |
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| Q | 735 | cccttt | 740 | Q |
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| T | 32264300 | cccttt | 32264295 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 38 - 360
Target Start/End: Complemental strand, 32255946 - 32255624
Alignment:
| Q | 38 | gcagaagacagtttcaatgctatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttacactt-acctgttccaaggtcaatcat | 136 | Q |
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| T | 32255946 | gcagaagacagtttcaacggtatcaacgaactcttgtttgtctctgagaacccaattaatcttattgctgttacacttaacctgttccaaggtcaatcat | 32255847 | T |
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| Q | 137 | aatgtggagttggatttcatcttctcgtgattgatcaat--atattttcatcttttaaaatatgatcaatttaaactataagaaaaatcaaatattatat | 234 | Q |
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| T | 32255846 | aatgtggagttggatttcatcttcttgtgattgattgatcaatattttcatcttctaaaatattataaattgaaactataagagaaatcaaatattatat | 32255747 | T |
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| Q | 235 | agttacgtgcagttatttgcatcttataattttatctactattattatttgtgtcac-aataatcattggaatactttttctatcaaaataaaaaataat | 333 | Q |
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| T | 32255746 | agttacttgcaattacttgcatcatataattttat---ctattactatttgtatcacaaataatcattggaatactttttcaatcaaaat-aaaaataat | 32255651 | T |
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| Q | 334 | catagaaaaagtattcaatacaggtta | 360 | Q |
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| T | 32255650 | catagaaaaagaattcaatacaggtta | 32255624 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 597 - 740
Target Start/End: Complemental strand, 32249161 - 32249018
Alignment:
| Q | 597 | gtactcattatatatgtgtctgtgcttatgggaaaatgccatgacggaaacaccatataatccagctaattccagtataaacaaggacattcttgcggcc | 696 | Q |
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| T | 32249161 | gtactcattatatatgtgtctatgcttaagggaaaatgccacgacgggaacaccatataatccagccaattccactataaacaaggtcattcttgtggcc | 32249062 | T |
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| Q | 697 | attgacattgatgctcttgactaatgggcgtctaaaatcccttt | 740 | Q |
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| T | 32249061 | actgacattgatgctcttgactaatgagagtctgaaatcccttt | 32249018 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 395 - 570
Target Start/End: Complemental strand, 32255577 - 32255402
Alignment:
| Q | 395 | cccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgcatgaaaaccc | 494 | Q |
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| T | 32255577 | cccttattgttggtcttagtttaggggaaagtttgtgaagctcacggaacagaatttttatgtcaagtgtgaggcacccaactagtgcccatgaaaaccc | 32255478 | T |
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| Q | 495 | tgccctgatgactgcacggagcactataatgtgttgagccccgagaaacatttgataagccagaacaatccaaccg | 570 | Q |
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| T | 32255477 | cgccctaatgaccgcatgtagcattgcaatgtgttgagcccctggtgacatttgataagccagaacaatccaaccg | 32255402 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 639 - 737
Target Start/End: Complemental strand, 32255383 - 32255285
Alignment:
| Q | 639 | gacggaaacaccatataatccagctaattccagtataaacaaggacattcttgcggccattgacattgatgctcttgactaatgggcgtctaaaatccc | 737 | Q |
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| T | 32255383 | gacgggaacaccatataacccagccaattccaatataaaaaaggccatacttgtggccactgacattgatgctcttgactaatgggagtctaaagtccc | 32255285 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 32250459 - 32250388
Alignment:
| Q | 41 | gaagacagtttcaatgctatcaacgaactgttgtttgtctc-tgagagcccaattaatcttattgctgttac | 111 | Q |
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| T | 32250459 | gaagacagtttcaacggtatcaacgaactcttgtttgtctcttcagagcccaattaatcatattgttgttac | 32250388 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 604
Target Start/End: Complemental strand, 32249601 - 32249544
Alignment:
| Q | 547 | tgataagccagaacaatccaaccgcagtgtcgcaacatctttgatattgtgtactcat | 604 | Q |
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| T | 32249601 | tgataagccagaacaatccaatcatagcaccgcaacatctttgatattgtgtactcat | 32249544 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 41 - 142
Target Start/End: Complemental strand, 28719636 - 28719541
Alignment:
| Q | 41 | gaagacagtttcaatgctatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttacacttacctgttccaaggtcaatcataatg | 140 | Q |
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| T | 28719636 | gaagacagtttcaacgatatcaatgaactcttgtttgtctctgagagcccaattaatcttattgttg------ttacctgttccaaggtcaatcataatg | 28719543 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 23203591 - 23203510
Alignment:
| Q | 190 | taaaatatgatcaatttaaactataagaaaaatcaaatattatatagttacgtgcagttatttgcatc-ttataattttatc | 270 | Q |
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| T | 23203591 | taaaatatgaccaatttaaactataagagaaatcaaacattatatagttacttgcaattatttgcatctttataattttatc | 23203510 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 396 - 536
Target Start/End: Complemental strand, 23203314 - 23203167
Alignment:
| Q | 396 | ccttaatgttggtcttagtttaagggaaaatttgtgtagctcacggaacacaattttaatgttaagcacgaggcgctcaactagtgcgca-tgaaaaccc | 494 | Q |
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| T | 23203314 | ccttaatgctggtctatgtttaggggaaagtttgtgaagctcacggaacatgtttttaatgtcaagcgcgaagcgctaaactagtgcgcattgaaaactc | 23203215 | T |
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| Q | 495 | tgccc------tgatgactgcacggagcactataatgtgttgagcccc | 536 | Q |
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| T | 23203214 | cgccctaatattaatgaccgcacggagcactgtaatgtgttgagcccc | 23203167 | T |
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Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 23204913 - 23204840
Alignment:
| Q | 39 | cagaagacagtttcaatgctatcaacgaactgttgtttgtctctgagagcccaattaatcttattgctgttaca | 112 | Q |
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| T | 23204913 | cagaagacagtttcaaccatatcaatgaactcttgttcgtctctgagagtccaattaatcatattgttgttaca | 23204840 | T |
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