View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_high_11 (Length: 453)
Name: NF0272_high_11
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 13343968 - 13344057
Alignment:
| Q |
220 |
cgaattcgggattaccaaaactctcttctcatnnnnnnntgaagggttaacactaaacaaaacctactctatttccgtgaaacatattctt |
310 |
Q |
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| T |
13343968 |
cgaattcgggattaccaaaactctcttctcataaaaaa-tgaagggttaacactaaacaaaacctactctatttccgtgaaacatattctt |
13344057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 13344774 - 13344815
Alignment:
| Q |
332 |
aaaccaaacatgtcttactcattaaaaattgaagtgatcaaa |
373 |
Q |
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| T |
13344774 |
aaaccaaacatgtcttactcattaaaaattgaagtgatcaaa |
13344815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 13344833 - 13344865
Alignment:
| Q |
392 |
cagtgtgaacttaattaattgagacattgtttg |
424 |
Q |
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| T |
13344833 |
cagtgtgaacttaattaattgagaaattgtttg |
13344865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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