View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0272_high_15 (Length: 402)

Name: NF0272_high_15
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0272_high_15
NF0272_high_15
[»] chr4 (1 HSPs)
chr4 (30-392)||(34718695-34719050)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 392
Target Start/End: Original strand, 34718695 - 34719050
Alignment:
Q  30 gttagtgttgttaattcttcaatttcatcgttcctttatgtttgccnnnnnnncgatcgattagggtttcgtttacgtaaccttttccccctttgtcatc 129  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||| |||||||||    
T  34718695 gttagtgttgttaat-cttcaatttcatcgttcctttatttttgcccttttttcgatcgattagggtttcgtttacgtaaccttttccccatttgtcatc 34718793  T
Q  130 gtcgttaacctatgcctttatctcaccttcgattcatgaatcatttcgctgcttgaaaattggaatcatcagttcatcgtgtgtattgcatgatctatgt 229  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34718794 gtcgctaacctatgcctttatctcaccttcgattcatgaatcgtttcgctgcttgaaaattggaatcatcagttcatcgtgtgtattgcatgatctatgt 34718893  T
Q  230 cttgaacgc-ttttttgtagttgttgatttccttgaatattattgaaacagcgattaaagtggtttgaacttttctataatatattgttcaattaatnnn 328  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       
T  34718894 cttgaacgctttttttgtagttgttgatttccttgaatattattgaaacagcgattaaagtggtttgaacttttctataatatattgttcaattgataaa 34718993  T
Q  329 nnnnnntatatatatcttttttgtttggtattaattggaaattctaacttttggttgctctgtg 392  Q
           | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34718994 a------aaaaatatcttttttgtttggtattaattggaaa-tctaacttttggttgctctgtg 34719050  T

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