View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_high_4 (Length: 567)
Name: NF0272_high_4
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 30 - 489
Target Start/End: Complemental strand, 42003837 - 42003377
Alignment:
| Q |
30 |
atatgttgtgttaccgactttgaaagtaacgtatagtacattgtgtatgttttactagaagatacatgtgttggtcccatagacattaatgcattgtcta |
129 |
Q |
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| T |
42003837 |
atatgttgtgttaccaactttgaaagtaacgtatagtacattgtgtatgttttactagaagatacatgtgttggtcccatagacattaatgcattgtcta |
42003738 |
T |
|
| Q |
130 |
ccttagagtttgttaaaatcatgtgatcttgacagattcatgaacgttaagagtgttctccagccttgcaggtcttgaaattgaaacttgtcttcgagag |
229 |
Q |
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| T |
42003737 |
ccttagagtttgttaaaatcatgtgatcttgacagattcatgaacgttaagagtgttctccagccttgcaggtcttgaaattgaaacttgtcttcgagag |
42003638 |
T |
|
| Q |
230 |
agacagctaatttaatgacccaaaaacatgttttcattttcaagggtaggatgatagtgttactacctactgggagtgaagggtgccccactatattagt |
329 |
Q |
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| T |
42003637 |
agacagctaatttaatgacccaaaaacatgttttcattttcaagggtaggatgatagtgttactatctactgggagtgaagggtgccccactatattagt |
42003538 |
T |
|
| Q |
330 |
agagaccataacaatttatctagtttatgccaaaacaatcttgtctattttttactcttg-nnnnnnntaatgctaacaaatgttcttaaaacactagtt |
428 |
Q |
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| T |
42003537 |
agagaccataacaatttatctagtttatgccaaaacaatcttgtcttttttttactcttgaaaaaaaataatgctaacaaatgttcttaaaacactagtt |
42003438 |
T |
|
| Q |
429 |
aagaaaacgtatataataatttattttgaaatttgtgcaaaaaatactcttttcaatgaaa |
489 |
Q |
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| T |
42003437 |
aagaaaacgtatataataatttattttgaaatttgtgcacaaaatactcttttcaatgaaa |
42003377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 100 - 322
Target Start/End: Complemental strand, 42012519 - 42012292
Alignment:
| Q |
100 |
ttggtcccatagacattaatgcattgtctaccttagagtttgttaaaatcatgtgatct-------tgacagattcatgaacgttaa-gagtgttctcca |
191 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||| |||||||| || |
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| T |
42012519 |
ttggtcccaaagaca--aatgcattgtctaccttagagtttgttaaaatcatgtgatatatggtgttgatggattcatgaatgttaaagagtgttc--ca |
42012424 |
T |
|
| Q |
192 |
gccttgcaggtcttgaaattgaaacttgtcttcg-agagagacagctaatttaatgacccaaaaacatgttttcattttcaagggtaggatgatagtgtt |
290 |
Q |
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||||||||| || ||||||||||| ||||||| | ||| |||||||||||| | ||||||| ||| || | | ||||| |||| || |||| |||||| |
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| T |
42012423 |
gccttgcagatcatgaaattgaaaattgtcttagcagatagacagctaattgagcgacccaagaacttgctcttgttttccagggaagcatgagagtgtt |
42012324 |
T |
|
| Q |
291 |
actacctactgggagtgaagggtgccccacta |
322 |
Q |
| |
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|||| ||| ||||||| |||||| |||||||| |
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| T |
42012323 |
actatctattgggagtaaagggtaccccacta |
42012292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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