View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_10 (Length: 455)
Name: NF0272_low_10
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 240 - 438
Target Start/End: Complemental strand, 4597960 - 4597762
Alignment:
| Q |
240 |
tatagttgcgtttatttttaatcattaacaagttgattccaattatgacaagtgattgaataacaattaaaaacactaaatctttctaagaaaaacaagt |
339 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4597960 |
tataattgtgtttatttttaatcattaacaagttgattccaattatgacaagtgattgaataacaattaaaaacactaaatctttctaagaaaaacaagt |
4597861 |
T |
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| Q |
340 |
ttctaatgcattcaatcacttaacatacatattgcaatgaaactaacacaatttatcaaaaatcaaatcatataatgcaaaataacgggagaagatgca |
438 |
Q |
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| T |
4597860 |
tcctaatgcattcaatcacttaacatacatattgcaatgaaactaacacaatttatcaaaaatcaaatcatataatgcaaaataacgggagaagatgca |
4597762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 4598619 - 4598411
Alignment:
| Q |
27 |
agtgacggatacactgtacgttttggaattaactttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttc |
126 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4598619 |
agtgacggatacaccgtgcgttttggaattaactttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaaatttc |
4598520 |
T |
|
| Q |
127 |
ttgaaaaacctcagaattagagcttgatgtatgtaatcatgaccaccaataatactatatgagcttggtcattaatcaagagcaactttaatcttgcatt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
4598519 |
ttgaaaaacctcagaattagagcttgatgtatgtaatcatgaccaccaataaaacaatatgagtttggtcattaatcaagagaaactataatcttgcatt |
4598420 |
T |
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| Q |
227 |
ggttttctt |
235 |
Q |
| |
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||||||||| |
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| T |
4598419 |
ggttttctt |
4598411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 4623133 - 4622957
Alignment:
| Q |
29 |
tgacggatacactgtacgttttggaattaactttgttgattatgagaatg---atcttaaaagacaccctaagctctctgcccgttggtttaggaagttt |
125 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
4623133 |
tgacggatacactgtgcgttttggaattaactttgttgattatgagaatggtcatcttacaagacaccctaagctctctgcccggtggtttaggaagttt |
4623034 |
T |
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| Q |
126 |
cttgaaaaacctcagaattagagcttgatgtatgtaatcatgaccaccaataatactatatgagcttggtcattaatc |
203 |
Q |
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| T |
4623033 |
cttcaacataat-agaattattggttgatgcatgtcatcatgaccaccaataatactgtgtgagcttggtcattaatc |
4622957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 25015846 - 25015643
Alignment:
| Q |
33 |
ggatacactgtacgttttggaattaactttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttcttgaaa |
132 |
Q |
| |
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||||||||| |||||||||||| |||| |||| |||| | || ||||||||||||||| ||||||||||||| |||||||||||| |||||| | | |
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| T |
25015846 |
ggatacactagacgttttggaatgaactatgttaattacaatgataatcttaaaagacaccaaaagctctctgcccattggtttaggaactttcttaaga |
25015747 |
T |
|
| Q |
133 |
aacctcagaattagagcttgatgtatgtaatcatgaccaccaataatactatatgagcttggtcattaatcaagagcaactttaatcttgcattggtttt |
232 |
Q |
| |
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||| || ||| | |||||||||||| || || | | ||||||||| |||||| |||||||||||||||||| | |||||||| ||| ||| |||| |
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| T |
25015746 |
aacactagtgttacaacttgatgtatgtcatgataatccccaataatatgatatgaacttggtcattaatcaagaactactttaattttgaattagtttc |
25015647 |
T |
|
| Q |
233 |
ctta |
236 |
Q |
| |
|
|||| |
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|
| T |
25015646 |
ctta |
25015643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 25037115 - 25037026
Alignment:
| Q |
44 |
acgttttggaattaactttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttcttgaaaa |
133 |
Q |
| |
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||||||||||||||||||||| ||||| | || ||||||||||||||| ||||| ||||||| |||||||||||| |||||| |||| |
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| T |
25037115 |
acgttttggaattaactttgtagattacaaagataatcttaaaagacaccaaaagctttctgcccattggtttaggaattttcttaaaaa |
25037026 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 18805862 - 18806070
Alignment:
| Q |
30 |
gacggatacactgtacgttttggaattaactttgttgattatgagaatgatcttaaaagacaccctaagctctctgcccgttggtttaggaagtttcttg |
129 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18805862 |
gacggatacaccttacgttttggaattaactttgttgatttcaaaaataatcttaaaagataccctaagctctctgcccgttggtttaggaagtttcttg |
18805961 |
T |
|
| Q |
130 |
aaaaacctcagaattagagcttgatgtatgtaatcatgaccaccaataatactatatgagcttggtcattaatcaagagcaactttaatcttgcattggt |
229 |
Q |
| |
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| |||||| ||| ||||||||||||||| || ||| ||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||| |
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| T |
18805962 |
agaaaccttagagagggagcttgatgtatgtcattgtgatcaccaataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggt |
18806061 |
T |
|
| Q |
230 |
tttcttaat |
238 |
Q |
| |
|
||||||||| |
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| T |
18806062 |
tttcttaat |
18806070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 416
Target Start/End: Original strand, 27594584 - 27594730
Alignment:
| Q |
268 |
caagttgattccaattatgacaagtgattgaataacaattaaaaacactaaatctttctaagaaaaacaagtttctaatgcattcaatcacttaacatac |
367 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||| ||| ||||||| | || ||| ||||||||| | ||| || |||||||||||||||| || |
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| T |
27594584 |
caagttaatttcaattatgacaagtgattgaataacgattgaaaacacaatattcttcaaagaaaaacta-tttttagcacattcaatcacttaac--ac |
27594680 |
T |
|
| Q |
368 |
atattgcaatgaaa-ctaacacaatttatcaaaaatcaaatcatataatg |
416 |
Q |
| |
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|||||| ||| ||| || || |||||||||| ||||||||||||||||| |
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| T |
27594681 |
atattgaaattaaacctctcaaaatttatcaagaatcaaatcatataatg |
27594730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 18956078 - 18955971
Alignment:
| Q |
259 |
aatcattaacaagttgattccaattatgacaagtgatt---gaataacaattaaaaacactaaatctttctaagaaaaacaagtttctaatgcattcaat |
355 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||||| ||||| |||| |||||| ||||| |||||||||||| || |||||||||||||||| |
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| T |
18956078 |
aatcattaacaagttaatttcatttatgacaagtgatttaataataataattgaaaacataaaatccttctaagaaaaaagag-ttctaatgcattcaat |
18955980 |
T |
|
| Q |
356 |
cacttaaca |
364 |
Q |
| |
|
||||||||| |
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|
| T |
18955979 |
cacttaaca |
18955971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 20503602 - 20503511
Alignment:
| Q |
270 |
agttgattccaattatgacaagtgattgaataacaattaaaaacactaaatctttctaagaaaaacaagtttctaatgcattcaatcacttaa |
362 |
Q |
| |
|
|||| |||||| |||||| |||| ||| ||| ||||| |||||||| ||||| ||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
20503602 |
agttaattccatttatgaaaagtaattaaattacaataaaaaacacaaaatccttcaaagaaaaagaagttt-taatgcattcaatcacttaa |
20503511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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