View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_14 (Length: 439)
Name: NF0272_low_14
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 38927033 - 38927458
Alignment:
| Q |
1 |
catattcaatgtcaaattgatctaacttaatctccatagcatcctcaacaaaaactatgttatataaaaagggtatgttcaaggattcagcaaaactcat |
100 |
Q |
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| T |
38927033 |
catattcaatgtcaaattgatctaacttaatctccatagcatcctcaacaaaaactatgttatataaaaagggtatgttcaaggattcagcaaaactcat |
38927132 |
T |
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| Q |
101 |
taaacttttgccaatttcttctaacttagccttgttagaaaatccaatagctgtgatcttcagaatttcaaccggcttttccttgcggtccactaatgct |
200 |
Q |
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| T |
38927133 |
taaacttttgccaatttcttctaacttagccttgttagaaaatccaatagctgtgatcttcagaatttcaaccggcttttccttgcggtctactaatgct |
38927232 |
T |
|
| Q |
201 |
tgcatgaaacatgtactcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccactatagcttgtacaccag |
300 |
Q |
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| T |
38927233 |
tgcatgaaacatgtactcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccactatagcttgtacaccag |
38927332 |
T |
|
| Q |
301 |
caaattgcattacttgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaattccgtctccttgtttct |
400 |
Q |
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| T |
38927333 |
caaattgcattacttgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaattccgtctccttgtttct |
38927432 |
T |
|
| Q |
401 |
ctcatttgatctatgcagtttcatct |
426 |
Q |
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| T |
38927433 |
ctcatttgatctatgcagtttcatct |
38927458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 44837828 - 44837896
Alignment:
| Q |
272 |
aacatgttccactatagcttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgaca |
340 |
Q |
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| T |
44837828 |
aacatgttcaactatagcttgtattccagtaaattgcataacttgattaaaaggaagtttttgatgaca |
44837896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 44837613 - 44837674
Alignment:
| Q |
60 |
ttatataaaaagggtatgttcaaggattcagcaaaactcattaaacttttgccaatttcttc |
121 |
Q |
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|||||||||||||| | |||||| |||||||||||||| |||| |||||||| ||||||| |
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| T |
44837613 |
ttatataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttc |
44837674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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