View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0272_low_17 (Length: 394)
Name: NF0272_low_17
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 1794167 - 1794448
Alignment:
| Q |
30 |
ctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgttaaaattattgcagttcaagagggcctcaggac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1794167 |
ctatattctcctgtcctagaacatatgactgtgaagcctgtttcatacgtcggatcagaggtggtgttaaaattattgcagttcaagagggcctcaggac |
1794266 |
T |
|
| Q |
130 |
aagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatattaccatttgtctcttt---ttaatgaaccaaga |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1794267 |
aagctgaagtgatttatgatgtggaagtctcgtcataatgttttttattcaactcttaaatgcatattaccatttgtctctttatattaatgaaccaaga |
1794366 |
T |
|
| Q |
227 |
atcaagaatgctcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattctacaatgtatatgaat |
308 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1794367 |
ataaagaatggtcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattctacaatgtatgtgaat |
1794448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 1794508 - 1794582
Alignment:
| Q |
302 |
tatgaatttctattgtgttgtttacaagaaaagtatggaaacatataatagattttgtgaatgtttctaaattcg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1794508 |
tatgaatttctattgtgttgtttacaagaaaagtatggaaacatataatagattcattgaatgtttctaaattcg |
1794582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 2021179 - 2021293
Alignment:
| Q |
111 |
ttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatattacca-tttgtctc |
209 |
Q |
| |
|
|||||||| ||||| | |||||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||| || |
|
|
| T |
2021179 |
ttcaagagagcctccgcacaagctgaagttgtttaccttggggaagtctcttcatgatgttttttattcaactcttaaatgtatattgccattttgtttc |
2021278 |
T |
|
| Q |
210 |
tttttaatgaaccaa |
224 |
Q |
| |
|
||||| |||| |||| |
|
|
| T |
2021279 |
tttttcatgatccaa |
2021293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 2008042 - 2008130
Alignment:
| Q |
111 |
ttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatattac |
199 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||| || |||||||| || | || |||||||||||||||||||||| ||||||| |
|
|
| T |
2008042 |
ttcaagagagcctcagcacaagctgaagttgtttaccttggggaagtctattggtgatattttttattcaactcttaaatgtatattac |
2008130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 20936207 - 20936248
Alignment:
| Q |
30 |
ctatattctcctgtcctagaacatatgactgtgaagcctgtt |
71 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
20936207 |
ctatattctcctgtgctagaaaagatgactgtgaagcctgtt |
20936248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 21239067 - 21239135
Alignment:
| Q |
110 |
gttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttatt |
178 |
Q |
| |
|
||||||||| || || ||| |||||||||| ||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
21239067 |
gttcaagagtgcatcgggagaagctgaagttatttaccatgtggaagactcttcataatgaattttatt |
21239135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1105 times since January 2019
Visitors: 2571