View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_2 (Length: 738)
Name: NF0272_low_2
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 492 - 729
Target Start/End: Complemental strand, 37533769 - 37533532
Alignment:
| Q |
492 |
gtatataagaagagtgtgacaatcacaatcccaaaattagtagtccccagnnnnnnngtcattaactgtgaggtctctctcattcttccttttctattat |
591 |
Q |
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| T |
37533769 |
gtatataaaaagagtgggacaatcacaatcccaaaattagtagtccccagtttttttgtcattaactgtgaggtctctctcattcttccttttctattat |
37533670 |
T |
|
| Q |
592 |
agccatggtcgttttcacaccttgtaattcgtgtctcctatctcttcattttgcttttcaagtttcaacaatattcagtgttgattaatcttcacctcat |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37533669 |
agccatggtcgttttcacaccttgtaattcgtgtctcctatctcttcattttgcttttcaagtttcaacaatattcagtgttgattaatcttcacctcat |
37533570 |
T |
|
| Q |
692 |
ctagttcgtagtactaattgataacctcttgttcatat |
729 |
Q |
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| T |
37533569 |
ctagttcgtagtactaattgataacctcttgttcatat |
37533532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 131 - 417
Target Start/End: Complemental strand, 37534461 - 37534174
Alignment:
| Q |
131 |
tggtcctggtttgggatatgagagtatgctatttttcaaagtcttaaattcga-ttcctctaatgtcaatttatgtgaactaatttaacttcttattaaa |
229 |
Q |
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| T |
37534461 |
tggtactggtttgagatatgagagtatactacttctcaaaatcttaaattcaacttcctctaatatcaatttatgtgagctaatttaacttcttattaaa |
37534362 |
T |
|
| Q |
230 |
tggtttacttgaagagtcttgtgctctctatcatttcatactcgtaatacacattttaacattatctgttgtgagtatttattgcaaatatttaatcgat |
329 |
Q |
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| T |
37534361 |
tggtttacttcaagagtcttgtgctctctatcatt-catactcataatacacattttaacactatctgttgtgagtatttattgcaaatatttaatcgat |
37534263 |
T |
|
| Q |
330 |
atgagtccta-tttgtcatccaaaaaactactactacatcgatccaagttatcacaagaaaatgatcattgtgatttgtgatactacta |
417 |
Q |
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| T |
37534262 |
atgagtcctattttgtcatccaaaaaactactactacatccatccaagttatcacaagaaaatgatcactgtgatttgtgatactacta |
37534174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 424 - 481
Target Start/End: Complemental strand, 37534135 - 37534078
Alignment:
| Q |
424 |
tggagtagtggtccacaatcaaaatgaagtccccttaaacgtgaagaaaatgtgaatg |
481 |
Q |
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| T |
37534135 |
tggagtagtggtccacaatcaaaatgaagtccccttaaacgtgaagaaaatgtgaatg |
37534078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 14660004 - 14660044
Alignment:
| Q |
184 |
ttcctctaatgtcaatttatgtgaactaatttaacttctta |
224 |
Q |
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| T |
14660004 |
ttcctctaatgtcaatttaagtggactaatttaacttctta |
14660044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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