View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0272_low_20 (Length: 340)

Name: NF0272_low_20
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0272_low_20
NF0272_low_20
[»] chr3 (1 HSPs)
chr3 (16-311)||(47510229-47510524)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 47510229 - 47510524
Alignment:
Q  16 agaagagattatagcacattggattgtttagaataattaataatcaattatatatcacatcaaagatcattacgcatatgttattattattttttgatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47510229 agaagagattatagcacattggattgtttagaataattaataatcaattatatatcacatcaaagatcattacgcatatgttattattattttttgatca 47510328  T
Q  116 tgtttttcttaatgggaacatttagattaaaggaaacctcaagagnnnnnnnnnnnnnngaatatcctaaaccaatatgctatgaaatttgggtatccac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||| |||||||||    
T  47510329 tgtttttcttaatgggaacatttagattaaaggaaacctcaagagaaaaacgaaaaaaagaatatcctaaaccaatatgctatgaaattttggtatccac 47510428  T
Q  216 gtcgatgtcaacgaatatgctatgaaattttggtatactctgatagtttgtggatttttctaattaacgttcaagttaaagtgagtgtgagtaaaa 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47510429 gtcgatgtcaacgaatatgctatgaaattttggtataatctgacagtttgtggatttttctaattaacgttcaagttaaagtgagcgtgagtaaaa 47510524  T

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