View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0272_low_21 (Length: 337)

Name: NF0272_low_21
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0272_low_21
NF0272_low_21
[»] chr3 (5 HSPs)
chr3 (116-336)||(26917129-26917352)
chr3 (263-314)||(8039834-8039885)
chr3 (263-314)||(11665953-11666004)
chr3 (247-309)||(9789111-9789173)
chr3 (269-313)||(25093517-25093561)
[»] chr2 (3 HSPs)
chr2 (263-313)||(34691805-34691855)
chr2 (263-313)||(34714217-34714267)
chr2 (263-311)||(6045918-6045966)
[»] chr8 (4 HSPs)
chr8 (271-311)||(4122251-4122291)
chr8 (263-314)||(11927085-11927136)
chr8 (263-332)||(11944674-11944744)
chr8 (263-312)||(12606830-12606879)
[»] chr5 (1 HSPs)
chr5 (263-314)||(3966512-3966563)
[»] chr4 (1 HSPs)
chr4 (263-333)||(44081557-44081627)
[»] chr1 (2 HSPs)
chr1 (274-331)||(48148018-48148076)
chr1 (263-313)||(52903258-52903308)
[»] scaffold0011 (1 HSPs)
scaffold0011 (263-312)||(240022-240071)
[»] chr7 (1 HSPs)
chr7 (264-313)||(9482944-9482993)


Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 116 - 336
Target Start/End: Original strand, 26917129 - 26917352
Alignment:
Q  116 aaagatgatattttatcgagatgttaataagtctatagtagaaagaacatgcacttaattgactcacaataataatagtaacttatgaaacacaaatacc 215  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26917129 aaagatgatattttatcgagatgttaataagtcta--gtagaaagaacatgcacttaattgactcataataataatagtaacttatgaaacacaaatacc 26917226  T
Q  216 gacacgaaaatcgaacatgacacatacactgatacgtcgactttgaaaataaattgataaa-----ataatacaattcattgtaattatatgtgtcggtg 310  Q
     ||||||||| |||||| |||||||||||||||||| ||||| ||| ||||||||||||||     |||||| |||||| |||||||||||||||| |||    
T  26917227 cacacgaaaaccgaacacgacacatacactgatacgccgactctgataataaattgataaaataatataatataattcagtgtaattatatgtgtcagtg 26917326  T
Q  311 tcgtttgatatcaaacacgacacata 336  Q
    ||||| |||||| |||||||||||||    
T  26917327 tcgttcgatatcgaacacgacacata 26917352  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 8039885 - 8039834
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcgt 314  Q
    ||||| |||| ||||| ||| |||||| ||||||||||||||||||||||||    
T  8039885 aataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgt 8039834  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 11665953 - 11666004
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcgt 314  Q
    ||||| |||||||||| | |||||| | ||||||||||||||||||||||||    
T  11665953 aataatttgataaaatcacacaatttagtgtaattatatgtgtcggtgtcgt 11666004  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 9789111 - 9789173
Alignment:
Q  247 atacgtcgactttgaaaataaattgataaaataatacaattcattgtaattatatgtgtcggt 309  Q
    |||||||||  |||| ||||| || ||||||||||| |||| | |||||||||||||||||||    
T  9789111 atacgtcgaaattgataataattttataaaataatataatttaatgtaattatatgtgtcggt 9789173  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 25093517 - 25093561
Alignment:
Q  269 ttgataaaataatacaattcattgtaattatatgtgtcggtgtcg 313  Q
    |||| ||||| | |||||||| |||||||||||||||||||||||    
T  25093517 ttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 25093561  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 34691855 - 34691805
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcg 313  Q
    ||||| |||||||||| ||| |||||| |||||||||||||||||||||||    
T  34691855 aataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34691805  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 34714267 - 34714217
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcg 313  Q
    ||||| |||||||||| ||| |||||| |||||||||||||||||||||||    
T  34714267 aataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34714217  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 6045966 - 6045918
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgt 311  Q
    ||||| |||||||||| ||||||||||  ||| ||||||||||||||||    
T  6045966 aataatttgataaaatcatacaattcaaagtagttatatgtgtcggtgt 6045918  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 4122291 - 4122251
Alignment:
Q  271 gataaaataatacaattcattgtaattatatgtgtcggtgt 311  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  4122291 gataaaattatataattcattgtaattatatgtgtcggtgt 4122251  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 11927136 - 11927085
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcgt 314  Q
    ||||| |||||||||| | | |||||| ||||||||||||||||||||||||    
T  11927136 aataatttgataaaatcacataattcagtgtaattatatgtgtcggtgtcgt 11927085  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 11944674 - 11944744
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcgt-ttgatatcaaacacgaca 332  Q
    ||||| |||||||||| | | || ||| |||||||||||||||||||||||| ||||| ||| ||||||||    
T  11944674 aataatttgataaaatcacataactcagtgtaattatatgtgtcggtgtcgtgttgatgtcatacacgaca 11944744  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 12606879 - 12606830
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtc 312  Q
    ||||| |||| ||||| ||| |||||| ||||||||||||||||||||||    
T  12606879 aataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtc 12606830  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 3966512 - 3966563
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcgt 314  Q
    ||||| |||| ||||| | |||||||| ||||||||||||||||||||||||    
T  3966512 aataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgt 3966563  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 44081627 - 44081557
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcgtttgatatcaaacacgacac 333  Q
    ||||| |||| ||||| ||| |||| | |||||||||||||||| ||| ||| | ||||||||||||||||    
T  44081627 aataatttgaaaaaatcatataatttaatgtaattatatgtgtcagtgccgtgtcatatcaaacacgacac 44081557  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 48148076 - 48148018
Alignment:
Q  274 aaaataatacaattcattgtaattatatgtgtcggtgtcgt-ttgatatcaaacacgac 331  Q
    ||||| ||| |||||| ||||||||||| |||||||||||| |||||||| ||||||||    
T  48148076 aaaatcatataattcagtgtaattatatatgtcggtgtcgtgttgatatcgaacacgac 48148018  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 52903258 - 52903308
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcg 313  Q
    ||||| || ||||||| ||| |||||| |||||||||||||||||||||||    
T  52903258 aataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcg 52903308  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 240071 - 240022
Alignment:
Q  263 aataaattgataaaataatacaattcattgtaattatatgtgtcggtgtc 312  Q
    ||||| |||| ||||||||| |||||| |||||| |||||||||||||||    
T  240071 aataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtc 240022  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 9482944 - 9482993
Alignment:
Q  264 ataaattgataaaataatacaattcattgtaattatatgtgtcggtgtcg 313  Q
    |||| |||| ||||| | |||||||| |||||||||||||||||||||||    
T  9482944 ataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 9482993  T

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