View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_22 (Length: 329)
Name: NF0272_low_22
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 97 - 329
Target Start/End: Original strand, 38926816 - 38927048
Alignment:
| Q |
97 |
atacaagtatcaacacagtcaaaaaatgctgagtaaaagaacaatgcttcaacaaacctattcgcaaacaaaggtgaattatggtttgcttccagttcaa |
196 |
Q |
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| T |
38926816 |
atacaagtatcaacacagtcaaaaaatgctgagtaaaagaacaatgcttcaacaaacctattcgcaaacaaaggtgaattatggtttgcttcaagttcaa |
38926915 |
T |
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| Q |
197 |
gtactatcataataaacggcttcatttttcttatcaccttcatcaaattctccaacccatcagaatttgataccatagtcctaagtgaacatggagagta |
296 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38926916 |
gtactatcataataaacggtttcatttttcttatcaccttcatcaaattctccaagccatcagaatttgataccatagtcctaagtgaacatggagagta |
38927015 |
T |
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| Q |
297 |
aatagcaacagcttcatcatattcaatgtcaaa |
329 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
38927016 |
aatagcaacagcttcatcatattcaatgtcaaa |
38927048 |
T |
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