View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0272_low_23 (Length: 316)

Name: NF0272_low_23

Description: NF0272

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0272_low_23

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 176; E-Value: 8e-95

Query Start/End: Original strand, 79 - 316

Target Start/End: Original strand, 37533364 - 37533602

Alignment:

Q	79	atgcaaatattttcgaaactatactgcaatcttttaattgctacacaaaactttcaagatattcctctagnnnnnnnnnnnnnnnnn-cttatgagatat	177	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	37533364	atgcaaatattttcgaaactatactgtaatcttttaattgctacacaaaactttcaagatattcctctagaaaaaaaaaaaaaaaaaacttatgagatat	37533463	T

Q	178	tttccaccttaatgggtatgcgaccaccgtgggaaagaaaaacaagtacaattatacaaagtcaactaatatgaacaagaggttatcaattagtactacg	277	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37533464	tttccaccttaatgggtatgcgaccaccgtgggaaagaaaaacaagtacaattatacaaagtcaactaatatgaacaagaggttatcaattagtactacg	37533563	T

Q	278	aactagatgaggtgaagattaatcaacactgaatattgt	316	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37533564	aactagatgaggtgaagattaatcaacactgaatattgt	37533602	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 69; E-Value: 6e-31

Query Start/End: Original strand, 17 - 85

Target Start/End: Original strand, 37532504 - 37532572

Alignment:

Q	17	ttatcttttatctctcaagatttatacatgttgtttatcaaaccttttatttaaaaagtgatatgcaaa	85	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37532504	ttatcttttatctctcaagatttatacatgttgtttatcaaaccttttatttaaaaagtgatatgcaaa	37532572	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]