View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_27 (Length: 301)
Name: NF0272_low_27
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 50108919 - 50108674
Alignment:
| Q |
1 |
gcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatcttgaaatttttgttgttgataaagtagaga |
100 |
Q |
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| T |
50108919 |
gcgaaattagccaaagttttgtgaggaactaaatatatagataaaataaaatatttttacgaatattatcttgaaatttttgttgttgataaagtagaga |
50108820 |
T |
|
| Q |
101 |
ctgaaatttttgggatagctaattatatatattatgagagtggctaaacacaataatacactaacttatnnnnnnnnnnctaaataaattaagataaaat |
200 |
Q |
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| T |
50108819 |
ctgaaatttttgggatagctaattatatatattatgagagtggctaaacacaataatacactaacttat-caaaaaaaactaaataaattaagataaaat |
50108721 |
T |
|
| Q |
201 |
agaatcgccaaggccaccctaagttaacattaccctccacccctgat |
247 |
Q |
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| T |
50108720 |
agaatcgccaaggccaccctaagttaacattaccctccacccctgat |
50108674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 4430064 - 4430105
Alignment:
| Q |
128 |
tatattatgagagtggctaaacacaataatacactaacttat |
169 |
Q |
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| T |
4430064 |
tatattattagagtggctaaacacaaaaatacactaacttat |
4430105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 42172134 - 42172197
Alignment:
| Q |
31 |
aaatatatagataaaataaaatatttttacgaatattatcttga-aatttttgttgttgataaagt |
95 |
Q |
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| T |
42172134 |
aaatatatagaaaaaataaaatacttttacga--attatcttgacaattttcgttgttgacaaagt |
42172197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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