View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_28 (Length: 300)
Name: NF0272_low_28
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 50108895 - 50109148
Alignment:
| Q |
1 |
ctcacaaaactttggctaatttcgctactgtcaacaatgatttggttagataagaaagtttcttatgatcacttacatgtttttggatgtaaagcatcct |
100 |
Q |
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| T |
50108895 |
ctcacaaaactttggctaatttcgctactgccaacgatgatttggttatataagaaagtttcttatgatcccttacatgtttttggatgtaaagcatcct |
50108994 |
T |
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| Q |
101 |
gtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagttttattatgttgttatgaagaaacttatcggatgttgtgatg |
200 |
Q |
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| T |
50108995 |
gtaaagagtcaaaattgtgtgtttagtggctactacctagatggagctcgttacaagttttattatgttgttatgaagaaacttatcagatgttgtgatg |
50109094 |
T |
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| Q |
201 |
ttgatttcatagaagacaagtagttgacagacattgatagaattagtgatgatg |
254 |
Q |
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| T |
50109095 |
ttgatttcatagaagacaagtagttgacagacattgatagaattagtgatgatg |
50109148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 28228738 - 28228603
Alignment:
| Q |
59 |
tttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagt |
158 |
Q |
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|||||||||| |||||| |||||| ||||| ||| ||| ||| ||||||||| ||||| ||||| | |||| || ||||||| ||| ||||| || |
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| T |
28228738 |
tttcttatgaccacttatgtgttttcggatgcaaaacata-tgtgaagagtcaacattgtatgtttctttgctatgacttagatggagctgattacaggt |
28228640 |
T |
|
| Q |
159 |
tttattatgttgttatgaagaaacttatcggatgttg |
195 |
Q |
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| T |
28228639 |
tttatgattgtgatatgaagaaacttatcggatgttg |
28228603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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