View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_33 (Length: 250)
Name: NF0272_low_33
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 41281123 - 41281292
Alignment:
| Q |
71 |
ttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaa |
170 |
Q |
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| T |
41281123 |
ttgctttagcccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaa |
41281222 |
T |
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| Q |
171 |
tcgccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaatttcgaactgcagcaacagcta |
240 |
Q |
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| T |
41281223 |
tcgccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaatttcgaattgcagcaacagcta |
41281292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 49082977 - 49082922
Alignment:
| Q |
21 |
cactgcattcaatatttttgtgtgtggaagccacggaaccactagaatgattgctt |
76 |
Q |
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| T |
49082977 |
cactgcattcaatatttttgtgtgtggaagccacagaaccactagaatgattgctt |
49082922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 9675650 - 9675532
Alignment:
| Q |
81 |
ccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccgtgaa |
180 |
Q |
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| T |
9675650 |
ccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcatgcaaatcaccatgaa |
9675551 |
T |
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| Q |
181 |
gaaatgcattttgtacatc |
199 |
Q |
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| T |
9675550 |
gaaaggcattttgcacatc |
9675532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 25068545 - 25068427
Alignment:
| Q |
81 |
ccataaagtgacttgtggagtcgacaaactacattctccccctgtcgacaaaaacccggaggaggcatcatgtatacttcttcaaccaaatcgccgtgaa |
180 |
Q |
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|||||||||||||| | ||| ||||| || || |||||||||||||| | || ||| || |||||| |||||| ||| |||| |||||| || |||| |
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| T |
25068545 |
ccataaagtgacttattgagccgacatacaacgttctccccctgtcggcgaagaccaggtggaggctccatgtacactaattcatgcaaatcaccatgaa |
25068446 |
T |
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| Q |
181 |
gaaatgcattttgtacatc |
199 |
Q |
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|||| |||||||| ||||| |
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| T |
25068445 |
gaaaggcattttgcacatc |
25068427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 5289992 - 5289948
Alignment:
| Q |
174 |
ccgtgaagaaatgcattttgtacatccatttggtgtaaaggccaa |
218 |
Q |
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| T |
5289992 |
ccgtgaagaaatgcatttttgacatccatttgatgtaacggccaa |
5289948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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