View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_6 (Length: 477)
Name: NF0272_low_6
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 242 - 449
Target Start/End: Complemental strand, 34148020 - 34147813
Alignment:
| Q |
242 |
atattcaagtaccaaatatttgcagcatcaggagcgaaaaattgagcagattatatttatggaggaccttatatttaataaaaaacacaagtaccctttt |
341 |
Q |
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| T |
34148020 |
atattcaagtaccaaatatttgcaacatcaggagtaaaaaattgagcagattatatttatggaggaccttatatttaataaaaaacacaagtaccctttt |
34147921 |
T |
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| Q |
342 |
aactatcaaaaggtgaccttaaacttgaagtagtacatagaagatggaccccaattacatgtacttcttcccaacataatttcccaaattgtcgtttact |
441 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34147920 |
aagtatcaaaaggtgaccttaaacttgaagtagtacatagaagatggaccccaattacatgtacttcttcccaacataatttcccaaattgtcgtttact |
34147821 |
T |
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| Q |
442 |
ttaaattt |
449 |
Q |
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|||||||| |
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| T |
34147820 |
ttaaattt |
34147813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 34148278 - 34148042
Alignment:
| Q |
15 |
tatggataaatttgactccttaaaacgttatcagactcaacttttcataaaagataaaatgaactatagtacacggttccaccctcggccaaaatgttca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34148278 |
tatggataaatttgactccttaaaacgttatcagactcaacttttcataatagatataatgaactatagtacacggttccaccctcggccaaaatgttca |
34148179 |
T |
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| Q |
115 |
tacatctctctaaagacaaaattgctagataaatatacatttagttcactaagtataatagataaacactttgttnnnnnnnnnnngtatattaatggac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||||| |
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| T |
34148178 |
tacatctctctaaagacaaaattgctagataaatatacatatagttcactaagtataatagataaacacttcgtt--aaaaaaaaagtatatcaatggac |
34148081 |
T |
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| Q |
215 |
aaacatatgctgttacataactgttaaatattcaagtac |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34148080 |
aaacatatgctgttacataactgttaaatattcaagtac |
34148042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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