View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0272_low_7 (Length: 470)

Name: NF0272_low_7
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0272_low_7
NF0272_low_7
[»] chr5 (10 HSPs)
chr5 (6-428)||(1347892-1348316)
chr5 (44-202)||(19806817-19806972)
chr5 (161-202)||(13712285-13712326)
chr5 (75-129)||(20111939-20111993)
chr5 (13-175)||(25511036-25511198)
chr5 (49-106)||(17377364-17377421)
chr5 (161-202)||(19969678-19969719)
chr5 (49-109)||(17383726-17383786)
chr5 (307-355)||(17392236-17392284)
chr5 (86-202)||(20049344-20049460)
[»] chr6 (2 HSPs)
chr6 (10-202)||(16258410-16258602)
chr6 (360-404)||(31114986-31115030)
[»] chr3 (5 HSPs)
chr3 (41-202)||(32226468-32226629)
chr3 (50-202)||(32242030-32242182)
chr3 (11-202)||(32224636-32224827)
chr3 (161-202)||(24890852-24890893)
chr3 (302-404)||(32242555-32242657)
[»] scaffold0009 (1 HSPs)
scaffold0009 (49-124)||(40589-40664)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 1347892 - 1348316
Alignment:
Q  6 agaaaagaacaaacaaacaccaaaaactatacttggacgtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttc 105  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1347892 agaaaagaacaaacaaaaaccaaaaactatacttggacgtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttc 1347991  T
Q  106 actatctcaccccaatcataaatggcatcataaaaccaaactagctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattgagta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1347992 actatctcaccccaatcataaatggcatcataaaaccaaactagctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattgagta 1348091  T
Q  206 aatcaaaagaaacaaatttccccatctgcacagcacaaaataacataaaaaatagaaattcaaacatcacatcac--ataatataattttgattataaat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1348092 aatcaaaagaaacaaatttccccatctgcacagcacaaaataacataaaaaatagaaattcaaacatcacatcacatataatataattttgattataaat 1348191  T
Q  304 atgatacctctaatactgttagaaactcgacattataaactgctttgaacggaatatcaaataaatggattttggccttgatcaacttggataagggttt 403  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348192 atgatacctctaatactgttagaaactcgacattataaactgctctgaacggaatatcaaataaatggattttggccttgatcaacttggataagggttt 1348291  T
Q  404 aaaatttatagttttggcttttttc 428  Q
    |||||||||||||||||| ||||||    
T  1348292 aaaatttatagttttggcctttttc 1348316  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 19806972 - 19806817
Alignment:
Q  44 gtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcataaatggcatcataaaacca 143  Q
    |||| ||||||||||||  ||| |  |||||||| ||||| |||||||| | |||||||||||||| |||| ||||||||| |   ||  |||   ||||    
T  19806972 gtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccaatcatga---gcgccattgcacca 19806876  T
Q  144 aactagctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
    |  ||| ||||| | | |||||||||||||||||| |||||||||||||||| ||||||    
T  19806875 agatagttgaaggtcagttaagttttcaaacacggaaaagcctttgtaatataaattga 19806817  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 13712285 - 13712326
Alignment:
Q  161 ttaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  13712285 ttaagttttcaaacacaggaaagcctttgtaatatgaattga 13712326  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 20111993 - 20111939
Alignment:
Q  75 ttgaagtttaggacaattctcgagcattttcactatctcaccccaatcataaatg 129  Q
    ||||||||| ||||| |||| |||||||||||||| ||||||||| |||| ||||    
T  20111993 ttgaagtttgggacatttctggagcattttcactacctcaccccagtcatgaatg 20111939  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 25511036 - 25511198
Alignment:
Q  13 aacaaacaaacaccaaaaactatacttggacgtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatct 112  Q
    |||||||||| ||||| ||||||   | ||| ||| ||||||||||||  |||| | |||| || |||||| |||| |||   ||||||||||| |||||    
T  25511036 aacaaacaaaaaccaataactatctattgacttgacaaacaaaccttttcaatgtaaagagcttcaagtttgggactattgatgagcattttcagtatct 25511135  T
Q  113 caccccaatcataaatggcatcataaaaccaaactagctgaagttgaattaagttttcaaaca 175  Q
    ||| ||| |||||| || |   || |||||||  || | |||||| |||||||||||||||||    
T  25511136 cactccagtcataagtgtctcgattaaaccaagatatccgaagttcaattaagttttcaaaca 25511198  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 17377421 - 17377364
Alignment:
Q  49 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttca 106  Q
    ||||||||||||  |||||  |||||||||||||| ||||||||||  ||||||||||    
T  17377421 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttca 17377364  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 19969678 - 19969719
Alignment:
Q  161 ttaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
    |||||||| ||||||| |||||| ||||||||||||||||||    
T  19969678 ttaagtttccaaacactggaaagtctttgtaatatgaattga 19969719  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 17383786 - 17383726
Alignment:
Q  49 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcacta 109  Q
    ||||||||||||  |||||  |||||||||||| | ||||||||||  |||||||||||||    
T  17383786 aaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcacta 17383726  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 17392284 - 17392236
Alignment:
Q  307 atacctctaatactgttagaaactcgacattataaactgctttgaacgg 355  Q
    |||||||  |||| |||||| ||| ||||||||||||||||||||||||    
T  17392284 atacctcacatacagttagatacttgacattataaactgctttgaacgg 17392236  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 202
Target Start/End: Complemental strand, 20049460 - 20049344
Alignment:
Q  86 gacaattctcgagcattttcactatctcaccccaatcataaatggcatcataaaaccaaactagctgaagttgaattaagttttcaaacacgggaaagcc 185  Q
    |||| |||| |||||||||||| | |||||| || |||| |||| | | || | |||||  ||| ||||||| | ||||||||  |||||||||||  ||    
T  20049460 gacatttctggagcattttcaccacctcacctcagtcatgaatgcctttatgataccaatgtagttgaagttcagttaagtttcaaaacacgggaagtcc 20049361  T
Q  186 tttgtaatatgaattga 202  Q
    ||| |||||||||||||    
T  20049360 tttataatatgaattga 20049344  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 16258410 - 16258602
Alignment:
Q  10 aagaacaaacaaacaccaaaaactatacttggacgtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcacta 109  Q
    |||||| |||||| ||||  |||||| | | |||||||  |||||||||||||||| || ||| |||||||||| |||||||| | |||||||| |||||    
T  16258410 aagaaccaacaaaaaccatgaactattcatcgacgtgaccaacaaacctttgaaattgaaagactttgaagtttcggacaattatggagcatttgcacta 16258509  T
Q  110 tctcaccccaatcataaatggcatcataaaaccaaactagctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
     ||||  |||||||| ||||  || || |||||||| |||  |||||| |||||||||||||||||| ||  |||||| ||||||||||||||    
T  16258510 cctcataccaatcatgaatgcaattatcaaaccaaaatagtcgaagttcaattaagttttcaaacacagggcagccttggtaatatgaattga 16258602  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 31115030 - 31114986
Alignment:
Q  360 tcaaataaatggattttggccttgatcaacttggataagggttta 404  Q
    |||||||||  ||||| ||||||||||||| ||||||||||||||    
T  31115030 tcaaataaaatgatttcggccttgatcaacgtggataagggttta 31114986  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 32226629 - 32226468
Alignment:
Q  41 gacgtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcataaatggcatcataaaa 140  Q
    |||||||  |||||||||||||||| |  |||||||||||||| |||||||  | |||||||| ||||| ||||  |||||||| ||||  || || |||    
T  32226629 gacgtgaccaacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacctcataccaatcatgaatgcaatgatcaaa 32226530  T
Q  141 ccaaactagctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
    ||||||||| |||| || || |||||||||||||||  || |||||| ||||||||||||||    
T  32226529 ccaaactagttgaaattcaactaagttttcaaacacatgatagccttggtaatatgaattga 32226468  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 32242030 - 32242182
Alignment:
Q  50 aacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcataaatggcatcataaaaccaaactag 149  Q
    ||||||||||| |||| || ||||||||||| || |||||||  | |||||||| || || ||||  ||||| || ||||  || || |||||||| |||    
T  32242030 aacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctcataccaattatgaatgcaataatcaaaccaaaatag 32242129  T
Q  150 ctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
      |||||| | ||||||||||||||||  || |||||| ||||||||||||||    
T  32242130 tcgaagttcagttaagttttcaaacacatgatagccttggtaatatgaattga 32242182  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 32224636 - 32224827
Alignment:
Q  11 agaacaaacaaacaccaaaaactatacttggacgtgagaaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactat 110  Q
    |||||||||||| ||||| |||||| | | ||| |||  |||||||| ||||||| |  ||||||||| |||| ||||| |  | |||||||| |||||     
T  32224636 agaacaaacaaaaaccaataactattcatcgacttgaccaacaaacccttgaaattggaagagtttgatgtttgggacagtaatggagcatttgcactac 32224735  T
Q  111 ctcaccccaatcataaatggcatcataaaaccaaactagctgaagttgaattaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
    | ||  |||||| | ||||  || || |||||||| |||  |||||| ||||| |||||||||||  ||| | |||| ||||||||||||||    
T  32224736 cgcataccaatcgtgaatgcaatgatcaaaccaaaatagtcgaagttcaattacgttttcaaacataggataaccttggtaatatgaattga 32224827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 24890893 - 24890852
Alignment:
Q  161 ttaagttttcaaacacgggaaagcctttgtaatatgaattga 202  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  24890893 ttaagttttcaaacacaggaaaacctttgtaatatgaattga 24890852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 32242555 - 32242657
Alignment:
Q  302 atatgatacctctaatactgttagaaactcgacattataaactgctttgaacggaatatcaaataaatggattttggccttgatcaacttggataagggt 401  Q
    |||| ||||||||  ||| |||||||| |  |||||| |||||||| ||| || || ||| |||||| |||| ||||| || |||||||||||||| |||    
T  32242555 atatcatacctctgttacagttagaaattgcacattagaaactgctctgagcgtaacatcgaataaacggatattggctttaatcaacttggataaaggt 32242654  T
Q  402 tta 404  Q
    |||    
T  32242655 tta 32242657  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 40664 - 40589
Alignment:
Q  49 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcat 124  Q
    ||||||||||||  ||| || |||||||||||||| |||||||||| ||||||||||| || ||||| ||| ||||    
T  40664 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcat 40589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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