View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0272_low_8 (Length: 457)
Name: NF0272_low_8
Description: NF0272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0272_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 114 - 324
Target Start/End: Original strand, 49082847 - 49083057
Alignment:
| Q |
114 |
acagattatcatgcctcctcaaaacataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttccgtg |
213 |
Q |
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| T |
49082847 |
acagattaccatgcctcctcaaaatataacatttccacagaataaacttgatgttgctgcagaaaacaatgctgcaagcaatcattctagtggttctgtg |
49082946 |
T |
|
| Q |
214 |
gcttccacacacaaaaatattgaatgcagtgnnnnnnntagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
313 |
Q |
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| T |
49082947 |
gcttccacacacaaaaatattgaatgcagtgaaaaaaatagtgagcctcatgtaagttttgcctatgcacgccatctaaatttcactgaagcagtgtaat |
49083046 |
T |
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| Q |
314 |
aggattgttag |
324 |
Q |
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||||||||||| |
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| T |
49083047 |
aggattgttag |
49083057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 49082780 - 49082812
Alignment:
| Q |
32 |
atgtcaatatacttacttatattccaatccaac |
64 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
49082780 |
atgtcaatatacttatttatattccaatccaac |
49082812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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