View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0274_low_2 (Length: 494)
Name: NF0274_low_2
Description: NF0274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0274_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 6176803 - 6177260
Alignment:
| Q |
8 |
gagcagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattctaacaaggtgcataacatttttagaccttagttta |
107 |
Q |
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| T |
6176803 |
gagcagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattctaacaaggtgcataacatttttagaccttagttta |
6176902 |
T |
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| Q |
108 |
aagggtgtgannnnnnnnnnnnnnnaattagaattagtattcttaatgtagtggattgtttccatgtgtgtgacagactgataaagcttcaatgctagat |
207 |
Q |
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| T |
6176903 |
aagggtgtgattttttattttttttaattagaattattattcttaacgtagtggattgtttccatgtgtgtgacagactgataaagcttcaatgctagat |
6177002 |
T |
|
| Q |
208 |
gaagctattgaataccttaaacagcttcagctccaagtacaggtttgtatctcttttatttactgcactttaggtcccacccttacactaatttttactt |
307 |
Q |
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| T |
6177003 |
gaagctattgaataccttaaacagcttcagctccaagtacaggtttgtatctcttttatttactgcactttaggtcccacccttacactaatttttactt |
6177102 |
T |
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| Q |
308 |
tttacaacacaaccaccctattctcagctcatcatcaatattcaatactgaatatttatgaagcattgacacatacgccagtgtcttacaaggcaccgaa |
407 |
Q |
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| T |
6177103 |
tttacaacacaaccaccctattctcagcccatcatcaatattcaatactgaatatttatgaagcattgacacatacgccagtgtcttacaaggcaccgaa |
6177202 |
T |
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| Q |
408 |
actaatttgagaagatgtgagtaattgattctaaatacttctctcggcggcttacatt |
465 |
Q |
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| T |
6177203 |
actaatttgagaagatgtgagtaattgattctaaatacttctctcggcggcttacatt |
6177260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 5756191 - 5756262
Alignment:
| Q |
11 |
cagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattctaacaaggtg |
82 |
Q |
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|||||||| ||||||| ||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
5756191 |
cagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtg |
5756262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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