View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0274_low_3 (Length: 426)
Name: NF0274_low_3
Description: NF0274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0274_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 95 - 343
Target Start/End: Complemental strand, 28094432 - 28094184
Alignment:
| Q |
95 |
gcctgttcctgataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgt |
194 |
Q |
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| T |
28094432 |
gcctgttcctgataaccctgttttatgcgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgt |
28094333 |
T |
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| Q |
195 |
ggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaa |
294 |
Q |
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| T |
28094332 |
ggtgataagttgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaa |
28094233 |
T |
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| Q |
295 |
tcaattattatgtattgtgtttgattgtttgtgtatatataagcaacag |
343 |
Q |
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| T |
28094232 |
tcaattattatgtattgtgtttgattgtttgtgtatatataagcaacag |
28094184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 295
Target Start/End: Original strand, 26156335 - 26156525
Alignment:
| Q |
105 |
gataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagt |
204 |
Q |
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| T |
26156335 |
gataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggatagga |
26156434 |
T |
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| Q |
205 |
tgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaat |
295 |
Q |
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| T |
26156435 |
ttcaggtcttttccaccgattttattgatgaggattttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaat |
26156525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 295
Target Start/End: Original strand, 26169633 - 26169823
Alignment:
| Q |
105 |
gataaccctgttttatgtgtgaaacctgtgacagaacgcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagt |
204 |
Q |
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| T |
26169633 |
gataaccctgttttgtgtgtgaaacctgtaacgagacgcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggatagga |
26169732 |
T |
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| Q |
205 |
tgcagatattttctacggattttatagacttagattttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaat |
295 |
Q |
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| T |
26169733 |
ttcaggtcttttccaccgattttattgatgaggattttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaat |
26169823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 55164595 - 55164544
Alignment:
| Q |
238 |
attttgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagc |
289 |
Q |
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| T |
55164595 |
attttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagc |
55164544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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